This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/build/unstable/amd64 in repository htslib.
commit 82b85af2b9d5f09c58d23033b8641dfff6af34e7 Author: Charles Plessy <[email protected]> Date: Wed Sep 24 21:32:44 2014 +0900 htslib (1.1-1) unstable; urgency=medium 1357fbd Merge tag '1.1' into debian/unstable 87549cd Updated symbols file. One symbol is missing. 873ea9b Removed orphan paragraph in machine-readable copyright file. 49de2b9 Allow parallel build. 7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends). 0e5e9e6 Conforms to Policy 3.9.6. -- Charles Plessy <[email protected]> Wed, 24 Sep 2014 21:24:11 +0900 --- log | 571 +++++++++++++++++++++++++++++++++++--------------------------------- 1 file changed, 291 insertions(+), 280 deletions(-) diff --git a/log b/log index 62cd2d2..34adffc 100644 --- a/log +++ b/log @@ -1,20 +1,20 @@ sbuild (Debian sbuild) 0.64.1 (13 Oct 2013) on aqwa.igloo ╔══════════════════════════════════════════════════════════════════════════════╗ -║ htslib 1.0-2 (amd64) 16 sept. 2014 20:35 ║ +║ htslib 1.1-1 (amd64) 24 sept. 2014 21:27 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: htslib -Version: 1.0-2 -Source Version: 1.0-2 +Version: 1.1-1 +Source Version: 1.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 -I: NOTICE: Log filtering will replace 'build/htslib-HoJijP/htslib-1.0' with '«PKGBUILDDIR»' -I: NOTICE: Log filtering will replace 'build/htslib-HoJijP' with '«BUILDDIR»' -I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-53d58173-3a11-46dd-9b64-be5096ec1397' with '«CHROOT»' +I: NOTICE: Log filtering will replace 'build/htslib-5gwd1t/htslib-1.1' with '«PKGBUILDDIR»' +I: NOTICE: Log filtering will replace 'build/htslib-5gwd1t' with '«BUILDDIR»' +I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/unstable-amd64-sbuild-01d18392-263d-4179-86e4-09a8ce3256d9' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Update chroot │ @@ -24,7 +24,7 @@ Hit http://ftp.jp.debian.org unstable InRelease Get:1 http://ftp.jp.debian.org unstable/main Sources/DiffIndex [7876 B] Get:2 http://ftp.jp.debian.org unstable/main amd64 Packages/DiffIndex [7876 B] Get:3 http://ftp.jp.debian.org unstable/main Translation-en/DiffIndex [7876 B] -Fetched 23.6 kB in 2s (11.2 kB/s) +Fetched 23.6 kB in 1s (13.3 kB/s) Reading package lists... Reading package lists... Building dependency tree... @@ -39,14 +39,14 @@ Reading state information... Local sources ───────────── -htslib_1.0-2.dsc exists in .; copying to chroot +htslib_1.1-1.dsc exists in .; copying to chroot Check arch ────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot -dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Xp7dfL/apt_archive/sbuild-build-depends-core-dummy.deb'. +dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-qqvBHY/apt_archive/sbuild-build-depends-core-dummy.deb'. OK Reading package lists... @@ -62,7 +62,7 @@ The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. -Need to get 0 B/820 B of archives. +Need to get 0 B/822 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11169 files and directories currently installed.) @@ -71,7 +71,7 @@ Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-exec, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-exec, zlib1g-dev -dpkg-deb: building package `sbuild-build-depends-htslib-dummy' in `/«BUILDDIR»/resolver-hNMZZt/apt_archive/sbuild-build-depends-htslib-dummy.deb'. +dpkg-deb: building package `sbuild-build-depends-htslib-dummy' in `/«BUILDDIR»/resolver-NVoury/apt_archive/sbuild-build-depends-htslib-dummy.deb'. OK Reading package lists... @@ -92,20 +92,24 @@ Suggested packages: libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev - libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl + libglib2.0-data shared-mime-info xdg-user-dirs xml-core + libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-exec file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-htslib-dummy zlib1g-dev -debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. -Need to get 0 B/9043 kB of archives. -After this operation, 27.5 MB of additional disk space will be used. +Need to get 3484 kB/9117 kB of archives. +After this operation, 27.1 MB of additional disk space will be used. +Get:1 http://ftp.jp.debian.org/debian/ unstable/main man-db amd64 2.7.0.1-1 [999 kB] +Get:2 http://ftp.jp.debian.org/debian/ unstable/main libglib2.0-0 amd64 2.42.0-1 [2485 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 3484 kB in 11s (305 kB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... 11169 files and directories currently installed.) -Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... -Unpacking libpipeline1:amd64 (1.3.0-1) ... +Preparing to unpack .../libpipeline1_1.3.1-1_amd64.deb ... +Unpacking libpipeline1:amd64 (1.3.1-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-8_amd64.deb ... Unpacking groff-base (1.22.2-8) ... @@ -113,8 +117,8 @@ Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5_amd64.deb ... Unpacking bsdmainutils (9.0.5) ... Selecting previously unselected package man-db. -Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ... -Unpacking man-db (2.6.7.1-1) ... +Preparing to unpack .../man-db_2.7.0.1-1_amd64.deb ... +Unpacking man-db (2.7.0.1-1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.2-2_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.2-2) ... @@ -128,8 +132,8 @@ Selecting previously unselected package libffi6:amd64. Preparing to unpack .../libffi6_3.1-2_amd64.deb ... Unpacking libffi6:amd64 (3.1-2) ... Selecting previously unselected package libglib2.0-0:amd64. -Preparing to unpack .../libglib2.0-0_2.40.0-5_amd64.deb ... -Unpacking libglib2.0-0:amd64 (2.40.0-5) ... +Preparing to unpack .../libglib2.0-0_2.42.0-1_amd64.deb ... +Unpacking libglib2.0-0:amd64 (2.42.0-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3) ... @@ -163,18 +167,18 @@ Unpacking dh-exec (0.13) ... Selecting previously unselected package sbuild-build-depends-htslib-dummy. Preparing to unpack .../sbuild-build-depends-htslib-dummy.deb ... Unpacking sbuild-build-depends-htslib-dummy (0.invalid.0) ... -Setting up libpipeline1:amd64 (1.3.0-1) ... +Setting up libpipeline1:amd64 (1.3.1-1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode -Setting up man-db (2.6.7.1-1) ... +Setting up man-db (2.7.0.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:amd64 (0.19.2-2) ... Setting up libmagic1:amd64 (1:5.19-2) ... Setting up libxml2:amd64 (2.9.1+dfsg1-4) ... Setting up libffi6:amd64 (3.1-2) ... -Setting up libglib2.0-0:amd64 (2.40.0-5) ... +Setting up libglib2.0-0:amd64 (2.42.0-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libunistring0:amd64 (0.9.3-5.2) ... @@ -194,8 +198,8 @@ Processing triggers for libc-bin (2.19-11) ... └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.16-1-amd64 amd64 (x86_64) -Toolchain package versions: binutils_2.24.51.20140903-1 dpkg-dev_1.17.13 g++-4.9_4.9.1-14 gcc-4.9_4.9.1-14 libc6-dev_2.19-11 libstdc++-4.9-dev_4.9.1-14 libstdc++6_4.9.1-14 linux-libc-dev_3.16.2-3 -Package versions: apt_1.0.8 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutils_2.24.51.20140903-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-2 cpp_4:4.9.1-4 cpp-4.9_4.9.1-14 dash_0.5.7-4 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-2 debhelper_9.20140817 debian-archive-keyring_2014.1 debianutils_4.4 dh-exec_0.13 diffutils_1:3.3-1 dpkg_1.17.13 dpkg-dev_1.17.13 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 eatmydata_26-2 fakeroot_1.20.1-1.1 f [...] +Toolchain package versions: binutils_2.24.51.20140918-1 dpkg-dev_1.17.13 g++-4.9_4.9.1-15 gcc-4.9_4.9.1-15 libc6-dev_2.19-11 libstdc++-4.9-dev_4.9.1-15 libstdc++6_4.9.1-15 linux-libc-dev_3.16.3-2 +Package versions: apt_1.0.9.1 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutils_2.24.51.20140918-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.8 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-2 cpp_4:4.9.1-4 cpp-4.9_4.9.1-15 dash_0.5.7-4 debconf_1.5.53 debconf-i18n_1.5.53 debfoster_2.7-2 debhelper_9.20140817 debian-archive-keyring_2014.1 debianutils_4.4 dh-exec_0.13 diffutils_1:3.3-1 dpkg_1.17.13 dpkg-dev_1.17.13 e2fslibs_1.42.12-1 e2fsprogs_1.42.12-1 eatmydata_26-2 fakeroot_1.20.1-1.1 [...] ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ @@ -205,10 +209,10 @@ Package versions: apt_1.0.8 base-files_7.5 base-passwd_3.5.36 bash_4.3-9 binutil Unpack source ───────────── -dpkg-source: warning: extracting unsigned source package (htslib_1.0-2.dsc) -dpkg-source: info: extracting htslib in htslib-1.0 -dpkg-source: info: unpacking htslib_1.0.orig.tar.gz -dpkg-source: info: unpacking htslib_1.0-2.debian.tar.xz +dpkg-source: warning: extracting unsigned source package (htslib_1.1-1.dsc) +dpkg-source: info: extracting htslib in htslib-1.1 +dpkg-source: info: unpacking htslib_1.1.orig.tar.gz +dpkg-source: info: unpacking htslib_1.1-1.debian.tar.xz dpkg-source: info: applying debian-changes Check disc space @@ -227,7 +231,7 @@ SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=charles -SCHROOT_SESSION_ID=unstable-amd64-sbuild-53d58173-3a11-46dd-9b64-be5096ec1397 +SCHROOT_SESSION_ID=unstable-amd64-sbuild-01d18392-263d-4179-86e4-09a8ce3256d9 SCHROOT_UID=1000 SCHROOT_USER=charles SHELL=/bin/sh @@ -236,23 +240,23 @@ USER=charles USERNAME=charles XDG_RUNTIME_DIR=/run/user/1000 XDG_SEAT=seat0 -XDG_SESSION_ID=1 +XDG_SESSION_ID=115 XDG_VTNR=7 dpkg-buildpackage ───────────────── dpkg-buildpackage: source package htslib -dpkg-buildpackage: source version 1.0-2 +dpkg-buildpackage: source version 1.1-1 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Charles Plessy <[email protected]> - dpkg-source --before-build htslib-1.0 + dpkg-source --before-build htslib-1.1 dpkg-buildpackage: host architecture amd64 -dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch +dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch fakeroot debian/rules clean -dh clean - dh_testdir - dh_auto_clean +dh clean --parallel + dh_testdir -O--parallel + dh_auto_clean -O--parallel make -j1 distclean make[1]: Entering directory '/«PKGBUILDDIR»' rm -f test/*.tmp test/*.tmp.* @@ -261,7 +265,7 @@ rm -f libhts.so libhts.so.* rm -f libhts.a bgzip tabix test/fieldarith test/hfile test/sam test/test_view test/test-vcf-api test/test-vcf-sweep rm -f TAGS *-uninstalled.pc make[1]: Leaving directory '/«PKGBUILDDIR»' - dh_clean + dh_clean -O--parallel rm -f debian/libhts1.substvars rm -f debian/libhts1.*.debhelper rm -rf debian/libhts1/ @@ -284,20 +288,20 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp - dpkg-source -b htslib-1.0 -dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch + dpkg-source -b htslib-1.1 +dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch dpkg-source: info: using source format `3.0 (quilt)' -dpkg-source: info: building htslib using existing ./htslib_1.0.orig.tar.gz +dpkg-source: info: building htslib using existing ./htslib_1.1.orig.tar.gz dpkg-source: info: local changes detected, the modified files are: - htslib-1.0/.travis.yml - htslib-1.0/README.md -dpkg-source: info: local changes have been recorded in a new patch: htslib-1.0/debian/patches/debian-changes -dpkg-source: info: building htslib in htslib_1.0-2.debian.tar.xz -dpkg-source: info: building htslib in htslib_1.0-2.dsc + htslib-1.1/.travis.yml + htslib-1.1/README.md +dpkg-source: info: local changes have been recorded in a new patch: htslib-1.1/debian/patches/debian-changes +dpkg-source: info: building htslib in htslib_1.1-1.debian.tar.xz +dpkg-source: info: building htslib in htslib_1.1-1.dsc debian/rules build -dh build - dh_testdir - dh_auto_configure +dh build --parallel + dh_testdir -O--parallel + dh_auto_configure -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_build -- \ @@ -305,7 +309,7 @@ dh_auto_build -- \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ # re-try later LDLIBS=-lhts \ - PACKAGE_VERSION="1.0-2" \ + PACKAGE_VERSION="1.1-1" \ libdir=/usr/lib/x86_64-linux-gnu make -j1 "CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2" LDFLAGS=-Wl,-z,relro make[2]: Entering directory '/«PKGBUILDDIR»' @@ -316,7 +320,7 @@ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTO gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c -echo '#define HTS_VERSION "1.0"' > version.h +echo '#define HTS_VERSION "1.1"' > version.h gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I. -DSAMTOOLS=1 -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c @@ -402,7 +406,7 @@ make[2]: Entering directory '/«PKGBUILDDIR»' test/fieldarith test/fieldarith.sam test/hfile test/sam -cd test && ./test_view.pl +cd test && REF_PATH=: ./test_view.pl === Testing aux#aux.sam, ref aux.fa === ./test_view -S -b aux#aux.sam > aux#aux.tmp.bam @@ -697,11 +701,11 @@ Successes 240 Failures 0 cd test && ./test.pl test_vcf_api: - /«PKGBUILDDIR»/test/test-vcf-api /tmp/3zZKs9rOsu/test-vcf-api.bcf + /«PKGBUILDDIR»/test/test-vcf-api /tmp/NKVe0YPr_D/test-vcf-api.bcf .. ok test_vcf_sweep: - /«PKGBUILDDIR»/test/test-vcf-sweep /tmp/3zZKs9rOsu/test-vcf-api.bcf + /«PKGBUILDDIR»/test/test-vcf-sweep /tmp/NKVe0YPr_D/test-vcf-api.bcf .. ok @@ -715,9 +719,9 @@ rm -f test/*.tmp test/*.tmp.* test/*.o test/*.dSYM \ test/fieldarith test/hfile test/test_view test/test-vcf-api test/test-vcf-sweep make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary -dh binary - dh_testroot - dh_prep +dh binary --parallel + dh_testroot -O--parallel + dh_prep -O--parallel rm -f debian/libhts1.substvars rm -f debian/libhts1.*.debhelper rm -rf debian/libhts1/ @@ -736,30 +740,30 @@ rm /«PKGBUILDDIR»/test/sam dh_auto_install -- \ prefix=/usr \ libdir=/usr/lib/x86_64-linux-gnu \ - PACKAGE_VERSION="1.0-2" + PACKAGE_VERSION="1.1-1" install -d debian/libhts1 install -d debian/libhts-dev install -d debian/htslib-test install -d debian/tabix - make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/x86_64-linux-gnu PACKAGE_VERSION=1.0-2 + make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/x86_64-linux-gnu PACKAGE_VERSION=1.1-1 make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p -m 755 /«PKGBUILDDIR»/debian/tmp/usr/bin /«PKGBUILDDIR»/debian/tmp/usr/include /«PKGBUILDDIR»/debian/tmp/usr/include/htslib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig -install -p -m 644 libhts.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 -ln -sf libhts.so.1.0-2 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so -ln -sf libhts.so.1.0-2 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1 -sed -e 's#@includedir@#/usr/include#g;s#@libdir@#/usr/lib/x86_64-linux-gnu#g;s#@PACKAGE_VERSION@#1.0-2#g' htslib.pc.in > /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc +install -p -m 644 libhts.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 +ln -sf libhts.so.1.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so +ln -sf libhts.so.1.1-1 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1 +sed -e 's#@includedir@#/usr/include#g;s#@libdir@#/usr/lib/x86_64-linux-gnu#g;s#@PACKAGE_VERSION@#1.1-1#g' htslib.pc.in > /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc install -p bgzip tabix /«PKGBUILDDIR»/debian/tmp/usr/bin install -p -m 644 htslib/*.h /«PKGBUILDDIR»/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.a -install -p -m 644 *.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 -install -p -m 644 *.5 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 +install -p -m 644 tabix.1 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 +install -p -m 644 faidx.5 sam.5 vcf.5 /«PKGBUILDDIR»/debian/tmp/usr/share/man/man5 make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' - dh_install + dh_install -O--parallel install -d debian/libhts1/usr/lib/x86_64-linux-gnu cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1 debian/libhts1/usr/lib/x86_64-linux-gnu/ - cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 debian/libhts1/usr/lib/x86_64-linux-gnu/ + cp -a debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 debian/libhts1/usr/lib/x86_64-linux-gnu/ install -d debian/libhts-dev/usr/include cp -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/x86_64-linux-gnu @@ -819,7 +823,7 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' install -d debian/tabix/usr/bin cp -a ./tabix debian/tabix/usr/bin/ cp -a ./bgzip debian/tabix/usr/bin/ - dh_installdocs + dh_installdocs -O--parallel install -g 0 -o 0 -d debian/libhts1/usr/share/doc/libhts1 install -g 0 -o 0 -m 644 -p debian/copyright debian/libhts1/usr/share/doc/libhts1/copyright install -g 0 -o 0 -d debian/libhts-dev/usr/share/doc/libhts-dev @@ -828,12 +832,12 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' install -g 0 -o 0 -m 644 -p debian/copyright debian/htslib-test/usr/share/doc/htslib-test/copyright install -g 0 -o 0 -d debian/tabix/usr/share/doc/tabix install -g 0 -o 0 -m 644 -p debian/copyright debian/tabix/usr/share/doc/tabix/copyright - dh_installchangelogs + dh_installchangelogs -O--parallel install -o 0 -g 0 -p -m644 debian/changelog debian/libhts1/usr/share/doc/libhts1/changelog.Debian install -o 0 -g 0 -p -m644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -o 0 -g 0 -p -m644 debian/changelog debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -o 0 -g 0 -p -m644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian - dh_installman + dh_installman -O--parallel man --recode UTF-8 ./vcf\.5 > vcf\.5\.new chmod 644 vcf.5.new mv -f vcf.5.new vcf.5 @@ -848,17 +852,17 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' man --recode UTF-8 ./tabix\.1 > tabix\.1\.new chmod 644 tabix.1.new mv -f tabix.1.new tabix.1 - dh_perl + dh_perl -O--parallel (grep -s -v perl:Depends debian/htslib-test.substvars; echo perl:Depends=perl) > debian/htslib-test.substvars.new mv debian/htslib-test.substvars.new debian/htslib-test.substvars - dh_link + dh_link -O--parallel rm -f debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1 - ln -sf libhts.so.1.0-2 debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1 + ln -sf libhts.so.1.1-1 debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1 rm -f debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so - ln -sf libhts.so.1.0-2 debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so + ln -sf libhts.so.1.1-1 debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -sf tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz - dh_compress + dh_compress -O--parallel cd debian/libhts1 chmod a-x usr/share/doc/libhts1/changelog.Debian gzip -9nf usr/share/doc/libhts1/changelog.Debian @@ -875,7 +879,7 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' chmod a-x usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian gzip -9nf usr/share/man/man1/tabix.1 usr/share/doc/tabix/changelog.Debian cd '/«PKGBUILDDIR»' - dh_fixperms + dh_fixperms -O--parallel find debian/libhts1 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts1 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts1/usr/share/doc -type f ! -regex 'debian/libhts1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 @@ -921,12 +925,12 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' find debian/tabix/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/tabix/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/tabix/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/tabix/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w - dh_strip - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 + dh_strip -O--parallel + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 strip --strip-debug debian/libhts-dev/usr/lib/x86_64-linux-gnu/libhts.a strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip - dh_makeshlibs + dh_makeshlibs -O--parallel rm -f debian/libhts1/DEBIAN/shlibs install -d debian/libhts1/DEBIAN echo 'libhts 1 libhts1' >>debian/libhts1/DEBIAN/shlibs @@ -938,20 +942,20 @@ make[1]: Leaving directory '/«PKGBUILDDIR»' echo '# End automatically added section' >> debian/libhts1.postrm.debhelper chmod 644 debian/libhts1/DEBIAN/shlibs chown 0:0 debian/libhts1/DEBIAN/shlibs - dpkg-gensymbols -plibhts1 -Idebian/libhts1.symbols -Pdebian/libhts1 "-edebian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2\ + dpkg-gensymbols -plibhts1 -Idebian/libhts1.symbols -Pdebian/libhts1 "-edebian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1\ " (grep -s -v misc:Pre-Depends debian/libhts1.substvars; echo misc:Pre-Depends=multiarch-support) > debian/libhts1.substvars.new mv debian/libhts1.substvars.new debian/libhts1.substvars rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/htslib-test/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs - dh_shlibdeps - dpkg-shlibdeps -Tdebian/libhts1.substvars debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 + dh_shlibdeps -O--parallel + dpkg-shlibdeps -Tdebian/libhts1.substvars debian/libhts1/usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 install -o 0 -g 0 -d debian/libhts-dev/DEBIAN install -o 0 -g 0 -d debian/htslib-test/DEBIAN install -o 0 -g 0 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip - dh_installdeb + dh_installdeb -O--parallel printf '#!/bin/sh set -e ' > debian/libhts1/DEBIAN/postinst @@ -964,7 +968,7 @@ set -e cat debian/libhts1.postrm.debhelper >> debian/libhts1/DEBIAN/postrm chown 0:0 debian/libhts1/DEBIAN/postrm chmod 755 debian/libhts1/DEBIAN/postrm - dh_gencontrol + dh_gencontrol -O--parallel echo misc:Depends= >> debian/libhts1.substvars dpkg-gencontrol -plibhts1 -ldebian/changelog -Tdebian/libhts1.substvars -Pdebian/libhts1 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe @@ -985,7 +989,7 @@ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is no dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 644 debian/tabix/DEBIAN/control chown 0:0 debian/tabix/DEBIAN/control - dh_md5sums + dh_md5sums -O--parallel (cd debian/libhts1 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/libhts1/DEBIAN/md5sums chown 0:0 debian/libhts1/DEBIAN/md5sums @@ -998,22 +1002,22 @@ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is no (cd debian/tabix >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/tabix/DEBIAN/md5sums chown 0:0 debian/tabix/DEBIAN/md5sums - dh_builddeb + dh_builddeb -O--parallel dpkg-deb --build debian/libhts1 .. -dpkg-deb: building package `libhts1' in `../libhts1_1.0-2_amd64.deb'. +dpkg-deb: building package `libhts1' in `../libhts1_1.1-1_amd64.deb'. dpkg-deb --build debian/libhts-dev .. -dpkg-deb: building package `libhts-dev' in `../libhts-dev_1.0-2_amd64.deb'. +dpkg-deb: building package `libhts-dev' in `../libhts-dev_1.1-1_amd64.deb'. dpkg-deb --build debian/htslib-test .. -dpkg-deb: building package `htslib-test' in `../htslib-test_1.0-2_all.deb'. +dpkg-deb: building package `htslib-test' in `../htslib-test_1.1-1_all.deb'. dpkg-deb --build debian/tabix .. -dpkg-deb: building package `tabix' in `../tabix_1.0-2_amd64.deb'. - dpkg-genchanges >../htslib_1.0-2_amd64.changes -dpkg-genchanges: not including original source code in upload - dpkg-source --after-build htslib-1.0 -dpkg-source: info: using options from htslib-1.0/debian/source/options: --single-debian-patch -dpkg-buildpackage: binary and diff upload (original source NOT included) +dpkg-deb: building package `tabix' in `../tabix_1.1-1_amd64.deb'. + dpkg-genchanges >../htslib_1.1-1_amd64.changes +dpkg-genchanges: including full source code in upload + dpkg-source --after-build htslib-1.1 +dpkg-source: info: using options from htslib-1.1/debian/source/options: --single-debian-patch +dpkg-buildpackage: full upload (original source is included) ──────────────────────────────────────────────────────────────────────────────── -Build finished at 20140916-2037 +Build finished at 20140924-2129 Finished ──────── @@ -1030,7 +1034,7 @@ lintian Merged Build-Depends: lintian Filtered Build-Depends: lintian -dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-og3Lsr/apt_archive/sbuild-build-depends-lintian-dummy.deb'. +dpkg-deb: building package `sbuild-build-depends-lintian-dummy' in `/«BUILDDIR»/resolver-InEKDh/apt_archive/sbuild-build-depends-lintian-dummy.deb'. OK Reading package lists... @@ -1072,7 +1076,7 @@ debconf: delaying package configuration, since apt-utils is not installed Need to get 0 B/3597 kB of archives. After this operation, 12.0 MB of additional disk space will be used. Selecting previously unselected package libssl1.0.0:amd64. -(Reading database ... 12651 files and directories currently installed.) +(Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1i-2_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1i-2) ... Selecting previously unselected package netbase. @@ -1168,7 +1172,7 @@ Unpacking lintian (2.5.27) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy. Preparing to unpack .../sbuild-build-depends-lintian-dummy.deb ... Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ... -Processing triggers for man-db (2.6.7.1-1) ... +Processing triggers for man-db (2.7.0.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libssl1.0.0:amd64 (1.0.1i-2) ... Setting up netbase (5.2) ... @@ -1204,8 +1208,7 @@ Setting up lintian (2.5.27) ... Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-11) ... I: htslib source: quilt-patch-using-template-description debian-changes -I: htslib source: wildcard-matches-nothing-in-dep5-copyright htslib/razf.? (paragraph at line 97) -I: htslib source: unused-file-paragraph-in-dep5-copyright paragraph at line 97 +W: htslib source: newer-standards-version 3.9.6 (current is 3.9.5) P: htslib source: debian-watch-may-check-gpg-signature P: libhts-dev: no-upstream-changelog I: libhts-dev: extended-description-is-probably-too-short @@ -1225,15 +1228,15 @@ I: Lintian run was successful. └──────────────────────────────────────────────────────────────────────────────┘ -htslib_1.0-2_amd64.changes: +htslib_1.1-1_amd64.changes: ─────────────────────────── Format: 1.8 -Date: Tue, 16 Sep 2014 20:27:04 +0900 +Date: Wed, 24 Sep 2014 21:24:11 +0900 Source: htslib Binary: libhts1 libhts-dev htslib-test tabix Architecture: source amd64 all -Version: 1.0-2 +Version: 1.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> @@ -1244,53 +1247,61 @@ Description: libhts1 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: - htslib (1.0-2) unstable; urgency=medium + htslib (1.1-1) unstable; urgency=medium . - Uploaded to unstable (see previous changelog from experimental). + 1357fbd Merge tag '1.1' into debian/unstable + 87549cd Updated symbols file. One symbol is missing. + 873ea9b Removed orphan paragraph in machine-readable copyright file. + 49de2b9 Allow parallel build. + 7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends). + 0e5e9e6 Conforms to Policy 3.9.6. Checksums-Sha1: - 26a46a9d4c72fc67320aa63547cced5d37cb1ef4 1204 htslib_1.0-2.dsc - 4d3ffed48e525aa614c6d90ca609ffd6478c0834 8168 htslib_1.0-2.debian.tar.xz - 4f7acbe3666d29c9356a3b1ad791df69c5452211 204078 libhts1_1.0-2_amd64.deb - bfb9a013f97ec60033dd50883d091874bff89b38 249018 libhts-dev_1.0-2_amd64.deb - 97e7ab12503eeadcdcd5d2a35c29eb15a1eeec94 516114 htslib-test_1.0-2_all.deb - 7dd5fe6fe85a29dcd1f603dbec40f1eefbb413cd 189978 tabix_1.0-2_amd64.deb + 64174691d6b696c41a0cf1cb1a04f557d23625b9 1200 htslib_1.1-1.dsc + 206d1947eea6ad0b519e8c271702cdc281c976a7 957217 htslib_1.1.orig.tar.gz + 883afbd9282c3e6dc02e7feed024229ba58fe565 8228 htslib_1.1-1.debian.tar.xz + 6e2b09a03a74c3abf8def399a75e9c6214181920 204556 libhts1_1.1-1_amd64.deb + e7430b65ca6a44e3157276fcd3448951da418650 249544 libhts-dev_1.1-1_amd64.deb + 5d17f0cc3291f02de7995fd8d866a407ec852ef8 516462 htslib-test_1.1-1_all.deb + cb0ebcaef0899425a987aa0211e89ba92d8aa185 189910 tabix_1.1-1_amd64.deb Checksums-Sha256: - 50402a0e8f5d7a0938fbbc7932dd93bf6acded810dd08d0aea788fca8e06bfe0 1204 htslib_1.0-2.dsc - e6cdea9223ba502ee6f1956bf7c066951120396f46ad5f883cf7fe8639e4a68b 8168 htslib_1.0-2.debian.tar.xz - b75989c2273ec9b0a8299dc5daef5fe9270ef41e7ba1b705090d5b17a61d8bbe 204078 libhts1_1.0-2_amd64.deb - fd2dc1cf4eebbf9da12eb28ba652fe560b1f47b6ff0042f1ea554e5a0ba812f3 249018 libhts-dev_1.0-2_amd64.deb - f8475f18a700a9f469c90bdf9fcf3c34e8ab38281a831ad3ec6747fcc265260a 516114 htslib-test_1.0-2_all.deb - 44908fc4b5cae97723b9acb5a631a795a9f1021d8783542bebdfbea28b01654a 189978 tabix_1.0-2_amd64.deb + 0e27964764e9ba0c3b8ae2cf7d60733edfbece8cebda3bde9367c02e9da1602d 1200 htslib_1.1-1.dsc + eb0a7918862336518afcaf62e3d7da8b7f87053fd40d88f2d1ab689f7f25923f 957217 htslib_1.1.orig.tar.gz + 933344fb9e357794bcbe162ceebc89d5c72870805e985ad06344ba703718b7fd 8228 htslib_1.1-1.debian.tar.xz + 04055c2b92f14d44338f4911875f9f82c87888564576937f9d23102d61e2f03a 204556 libhts1_1.1-1_amd64.deb + 0b47cd8f6feff42f55432cc6079117e55de126e6cebab77e4c9741ac47d1f21d 249544 libhts-dev_1.1-1_amd64.deb + de6f9e1724e2d951675b5d10d2e727e65fa310ae3efc0952b82d418828eed171 516462 htslib-test_1.1-1_all.deb + f8be942aea134a3a28c68eec11ff505a0116160d59680401f792864dab8c696d 189910 tabix_1.1-1_amd64.deb Files: - 8ffc250bba417d6bcf070ca2b885f013 204078 libs optional libhts1_1.0-2_amd64.deb - f79a07fdad848e91a280a49e050d13e1 249018 libdevel optional libhts-dev_1.0-2_amd64.deb - 280c34dbe5a0b8d296a6eab6d7e69ce9 516114 science optional htslib-test_1.0-2_all.deb - 841963677645879ffa8fb9962721f9eb 189978 science optional tabix_1.0-2_amd64.deb - 6d95fc6247432323659e0a45d9c8ea1c 1204 science optional htslib_1.0-2.dsc - b0921cda431b57bdbd688f460de3574d 8168 science optional htslib_1.0-2.debian.tar.xz + ba400c82cd9932fc6feb77f4f3e0072d 204556 libs optional libhts1_1.1-1_amd64.deb + 75e0ce0dbd48da4f8ca0609d5adaefec 249544 libdevel optional libhts-dev_1.1-1_amd64.deb + 1bd2059de9bb0186449165ec1f409e42 516462 science optional htslib-test_1.1-1_all.deb + 0a7109428dd7b989d82e80f6c6e72bdb 189910 science optional tabix_1.1-1_amd64.deb + b46a895274c92ed28530251f1dcf42be 1200 science optional htslib_1.1-1.dsc + d0be108a121ace289fc960b854625f84 957217 science optional htslib_1.1.orig.tar.gz + 2f74134e218c9e7c00c8ba7a6229bbea 8228 science optional htslib_1.1-1.debian.tar.xz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ -libhts1_1.0-2_amd64.deb +libhts1_1.1-1_amd64.deb ─────────────────────── new debian package, version 2.0. - size 204078 bytes: control archive=4374 bytes. + size 204556 bytes: control archive=4412 bytes. 979 bytes, 22 lines control 217 bytes, 3 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 17 bytes, 1 lines shlibs - 13474 bytes, 529 lines symbols + 13564 bytes, 533 lines symbols Package: libhts1 Source: htslib - Version: 1.0-2 + Version: 1.1-1 Architecture: amd64 Maintainer: Debian Med Packaging Team <[email protected]> - Installed-Size: 543 + Installed-Size: 542 Pre-Depends: multiarch-support Depends: libc6 (>= 2.15), zlib1g (>= 1:1.2.0.2) Section: libs @@ -1308,33 +1319,33 @@ libhts1_1.0-2_amd64.deb ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. -drwxr-xr-x root/root 0 2014-09-16 20:37 ./ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/ -lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so.1 -> libhts.so.1.0-2 --rw-r--r-- root/root 501280 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so.1.0-2 -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/libhts1/ --rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/libhts1/changelog.Debian.gz --rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/libhts1/copyright +drwxr-xr-x root/root 0 2014-09-24 21:29 ./ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/ +lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so.1 -> libhts.so.1.1-1 +-rw-r--r-- root/root 501296 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so.1.1-1 +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/libhts1/ +-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/libhts1/changelog.Debian.gz +-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/libhts1/copyright -libhts-dev_1.0-2_amd64.deb +libhts-dev_1.1-1_amd64.deb ────────────────────────── new debian package, version 2.0. - size 249018 bytes: control archive=1305 bytes. + size 249544 bytes: control archive=1300 bytes. 449 bytes, 14 lines control 1667 bytes, 26 lines md5sums Package: libhts-dev Source: htslib - Version: 1.0-2 + Version: 1.1-1 Architecture: amd64 Maintainer: Debian Med Packaging Team <[email protected]> Installed-Size: 945 - Depends: libhts1 (= 1.0-2) + Depends: libhts1 (= 1.1-1) Section: libdevel Priority: optional Multi-Arch: same @@ -1343,60 +1354,60 @@ libhts-dev_1.0-2_amd64.deb This package contains development files for the HTSlib: headers, static library, manual pages, etc. -drwxr-xr-x root/root 0 2014-09-16 20:37 ./ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/include/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/include/htslib/ --rw-r--r-- root/root 10450 2014-08-15 19:04 ./usr/include/htslib/bgzf.h --rw-r--r-- root/root 4101 2014-08-15 19:04 ./usr/include/htslib/faidx.h --rw-r--r-- root/root 6558 2014-08-15 19:04 ./usr/include/htslib/hfile.h --rw-r--r-- root/root 10673 2014-08-15 19:04 ./usr/include/htslib/hts.h --rw-r--r-- root/root 1721 2014-08-15 19:04 ./usr/include/htslib/hts_defs.h --rw-r--r-- root/root 2647 2014-08-15 19:04 ./usr/include/htslib/kfunc.h --rw-r--r-- root/root 21224 2014-08-15 19:04 ./usr/include/htslib/khash.h --rw-r--r-- root/root 3637 2014-08-15 19:04 ./usr/include/htslib/khash_str2int.h --rw-r--r-- root/root 4651 2014-08-15 19:04 ./usr/include/htslib/klist.h --rw-r--r-- root/root 2828 2014-08-15 19:04 ./usr/include/htslib/knetfile.h --rw-r--r-- root/root 8934 2014-08-15 19:04 ./usr/include/htslib/kseq.h --rw-r--r-- root/root 10125 2014-08-15 19:04 ./usr/include/htslib/ksort.h --rw-r--r-- root/root 6657 2014-08-15 19:04 ./usr/include/htslib/kstring.h --rw-r--r-- root/root 15120 2014-08-15 19:04 ./usr/include/htslib/sam.h --rw-r--r-- root/root 12203 2014-08-15 19:04 ./usr/include/htslib/synced_bcf_reader.h --rw-r--r-- root/root 2747 2014-08-15 19:04 ./usr/include/htslib/tbx.h --rw-r--r-- root/root 37811 2014-08-15 19:04 ./usr/include/htslib/vcf.h --rw-r--r-- root/root 1517 2014-08-15 19:04 ./usr/include/htslib/vcf_sweep.h --rw-r--r-- root/root 3988 2014-08-15 19:04 ./usr/include/htslib/vcfutils.h -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/ --rw-r--r-- root/root 732342 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.a -lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/libhts.so -> libhts.so.1.0-2 -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/pkgconfig/ --rw-r--r-- root/root 270 2014-09-16 20:37 ./usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/libhts-dev/ --rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/libhts-dev/changelog.Debian.gz --rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/libhts-dev/copyright -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/man5/ --rw-r--r-- root/root 2081 2014-09-16 20:37 ./usr/share/man/man5/faidx.5.gz --rw-r--r-- root/root 1535 2014-09-16 20:37 ./usr/share/man/man5/sam.5.gz --rw-r--r-- root/root 1854 2014-09-16 20:37 ./usr/share/man/man5/vcf.5.gz - - -htslib-test_1.0-2_all.deb +drwxr-xr-x root/root 0 2014-09-24 21:29 ./ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/include/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/include/htslib/ +-rw-r--r-- root/root 10450 2014-09-23 23:39 ./usr/include/htslib/bgzf.h +-rw-r--r-- root/root 4475 2014-09-23 23:39 ./usr/include/htslib/faidx.h +-rw-r--r-- root/root 6558 2014-09-23 23:39 ./usr/include/htslib/hfile.h +-rw-r--r-- root/root 10673 2014-09-23 23:39 ./usr/include/htslib/hts.h +-rw-r--r-- root/root 1721 2014-09-23 23:39 ./usr/include/htslib/hts_defs.h +-rw-r--r-- root/root 2647 2014-09-23 23:39 ./usr/include/htslib/kfunc.h +-rw-r--r-- root/root 21224 2014-09-23 23:39 ./usr/include/htslib/khash.h +-rw-r--r-- root/root 3798 2014-09-23 23:39 ./usr/include/htslib/khash_str2int.h +-rw-r--r-- root/root 4651 2014-09-23 23:39 ./usr/include/htslib/klist.h +-rw-r--r-- root/root 2828 2014-09-23 23:39 ./usr/include/htslib/knetfile.h +-rw-r--r-- root/root 8934 2014-09-23 23:39 ./usr/include/htslib/kseq.h +-rw-r--r-- root/root 10125 2014-09-23 23:39 ./usr/include/htslib/ksort.h +-rw-r--r-- root/root 6657 2014-09-23 23:39 ./usr/include/htslib/kstring.h +-rw-r--r-- root/root 15120 2014-09-23 23:39 ./usr/include/htslib/sam.h +-rw-r--r-- root/root 12203 2014-09-23 23:39 ./usr/include/htslib/synced_bcf_reader.h +-rw-r--r-- root/root 2747 2014-09-23 23:39 ./usr/include/htslib/tbx.h +-rw-r--r-- root/root 38337 2014-09-23 23:39 ./usr/include/htslib/vcf.h +-rw-r--r-- root/root 1517 2014-09-23 23:39 ./usr/include/htslib/vcf_sweep.h +-rw-r--r-- root/root 3988 2014-09-23 23:39 ./usr/include/htslib/vcfutils.h +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/ +-rw-r--r-- root/root 733376 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.a +lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/libhts.so -> libhts.so.1.1-1 +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/pkgconfig/ +-rw-r--r-- root/root 270 2014-09-24 21:29 ./usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/libhts-dev/ +-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/libhts-dev/changelog.Debian.gz +-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/libhts-dev/copyright +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/man5/ +-rw-r--r-- root/root 2081 2014-09-24 21:29 ./usr/share/man/man5/faidx.5.gz +-rw-r--r-- root/root 1535 2014-09-24 21:29 ./usr/share/man/man5/sam.5.gz +-rw-r--r-- root/root 1854 2014-09-24 21:29 ./usr/share/man/man5/vcf.5.gz + + +htslib-test_1.1-1_all.deb ───────────────────────── new debian package, version 2.0. - size 516114 bytes: control archive=1773 bytes. + size 516462 bytes: control archive=1777 bytes. 366 bytes, 12 lines control 3161 bytes, 46 lines md5sums Package: htslib-test Source: htslib - Version: 1.0-2 + Version: 1.1-1 Architecture: all Maintainer: Debian Med Packaging Team <[email protected]> - Installed-Size: 4122 + Installed-Size: 4121 Depends: perl Section: science Priority: optional @@ -1404,73 +1415,73 @@ htslib-test_1.0-2_all.deb Description: Test data for HTSlib This package contains test files and scripts for the HTSlib. -drwxr-xr-x root/root 0 2014-09-16 20:37 ./ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/htslib-test/ --rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/htslib-test/changelog.Debian.gz --rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/htslib-test/copyright -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/htslib-test/ --rw-r--r-- root/root 727 2014-08-15 19:04 ./usr/share/htslib-test/aux#aux.sam --rw-r--r-- root/root 29 2014-08-15 19:04 ./usr/share/htslib-test/aux.fa --rw-r--r-- root/root 18 2014-08-15 19:04 ./usr/share/htslib-test/aux.fa.fai --rw-r--r-- root/root 148 2014-08-15 19:04 ./usr/share/htslib-test/c1#bounds.sam --rw-r--r-- root/root 337 2014-08-15 19:04 ./usr/share/htslib-test/c1#clip.sam --rw-r--r-- root/root 388 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad1.sam --rw-r--r-- root/root 527 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad2.sam --rw-r--r-- root/root 665 2014-08-15 19:04 ./usr/share/htslib-test/c1#pad3.sam --rw-r--r-- root/root 15 2014-08-15 19:04 ./usr/share/htslib-test/c1.fa --rw-r--r-- root/root 14 2014-08-15 19:04 ./usr/share/htslib-test/c1.fa.fai --rw-r--r-- root/root 342 2014-08-15 19:04 ./usr/share/htslib-test/ce#1.sam --rw-r--r-- root/root 646 2014-08-15 19:04 ./usr/share/htslib-test/ce#2.sam --rw-r--r-- root/root 1889 2014-08-15 19:04 ./usr/share/htslib-test/ce#5.sam --rw-r--r-- root/root 1853 2014-08-15 19:04 ./usr/share/htslib-test/ce#5b.sam --rw-r--r-- root/root 2147245 2014-08-15 19:04 ./usr/share/htslib-test/ce#large_seq.sam --rw-r--r-- root/root 1634 2014-08-15 19:04 ./usr/share/htslib-test/ce#tag_depadded.sam --rw-r--r-- root/root 1646 2014-08-15 19:04 ./usr/share/htslib-test/ce#tag_padded.sam --rw-r--r-- root/root 1325 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap.sam --rw-r--r-- root/root 2769 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap1.sam --rw-r--r-- root/root 5547 2014-08-15 19:04 ./usr/share/htslib-test/ce#unmap2.sam --rw-r--r-- root/root 1060702 2014-08-15 19:04 ./usr/share/htslib-test/ce.fa --rw-r--r-- root/root 230 2014-08-15 19:04 ./usr/share/htslib-test/ce.fa.fai --rwxr-xr-x root/root 4351 2014-08-15 19:04 ./usr/share/htslib-test/compare_sam.pl --rw-r--r-- root/root 2409 2014-08-15 19:04 ./usr/share/htslib-test/fieldarith.c --rw-r--r-- root/root 916 2014-08-15 19:04 ./usr/share/htslib-test/fieldarith.sam --rw-r--r-- root/root 6824 2014-08-15 19:04 ./usr/share/htslib-test/hfile.c --rw-r--r-- root/root 4751 2014-08-15 19:04 ./usr/share/htslib-test/sam.c --rw-r--r-- root/root 8946 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-api.c --rw-r--r-- root/root 1936 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-api.out --rw-r--r-- root/root 3802 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-sweep.c --rw-r--r-- root/root 92 2014-08-15 19:04 ./usr/share/htslib-test/test-vcf-sweep.out --rwxr-xr-x root/root 6226 2014-08-15 19:04 ./usr/share/htslib-test/test.pl --rw-r--r-- root/root 4830 2014-08-15 19:04 ./usr/share/htslib-test/test_view.c --rwxr-xr-x root/root 2329 2014-08-15 19:04 ./usr/share/htslib-test/test_view.pl --rw-r--r-- root/root 0 2014-08-15 19:04 ./usr/share/htslib-test/xx#blank.sam --rw-r--r-- root/root 905485 2014-08-15 19:04 ./usr/share/htslib-test/xx#large_aux.sam --rw-r--r-- root/root 651 2014-08-15 19:04 ./usr/share/htslib-test/xx#large_aux2.sam --rw-r--r-- root/root 254 2014-08-15 19:04 ./usr/share/htslib-test/xx#minimal.sam --rw-r--r-- root/root 304 2014-08-15 19:04 ./usr/share/htslib-test/xx#pair.sam --rw-r--r-- root/root 517 2014-08-15 19:04 ./usr/share/htslib-test/xx#rg.sam --rw-r--r-- root/root 267 2014-08-15 19:04 ./usr/share/htslib-test/xx#triplet.sam --rw-r--r-- root/root 320 2014-08-15 19:04 ./usr/share/htslib-test/xx#unsorted.sam --rw-r--r-- root/root 51 2014-08-15 19:04 ./usr/share/htslib-test/xx.fa --rw-r--r-- root/root 29 2014-08-15 19:04 ./usr/share/htslib-test/xx.fa.fai - - -tabix_1.0-2_amd64.deb +drwxr-xr-x root/root 0 2014-09-24 21:29 ./ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/htslib-test/ +-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/htslib-test/changelog.Debian.gz +-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/htslib-test/copyright +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/htslib-test/ +-rw-r--r-- root/root 727 2014-09-23 23:39 ./usr/share/htslib-test/aux#aux.sam +-rw-r--r-- root/root 29 2014-09-23 23:39 ./usr/share/htslib-test/aux.fa +-rw-r--r-- root/root 18 2014-09-23 23:39 ./usr/share/htslib-test/aux.fa.fai +-rw-r--r-- root/root 148 2014-09-23 23:39 ./usr/share/htslib-test/c1#bounds.sam +-rw-r--r-- root/root 337 2014-09-23 23:39 ./usr/share/htslib-test/c1#clip.sam +-rw-r--r-- root/root 388 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad1.sam +-rw-r--r-- root/root 527 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad2.sam +-rw-r--r-- root/root 665 2014-09-23 23:39 ./usr/share/htslib-test/c1#pad3.sam +-rw-r--r-- root/root 15 2014-09-23 23:39 ./usr/share/htslib-test/c1.fa +-rw-r--r-- root/root 14 2014-09-23 23:39 ./usr/share/htslib-test/c1.fa.fai +-rw-r--r-- root/root 342 2014-09-23 23:39 ./usr/share/htslib-test/ce#1.sam +-rw-r--r-- root/root 646 2014-09-23 23:39 ./usr/share/htslib-test/ce#2.sam +-rw-r--r-- root/root 1889 2014-09-23 23:39 ./usr/share/htslib-test/ce#5.sam +-rw-r--r-- root/root 1853 2014-09-23 23:39 ./usr/share/htslib-test/ce#5b.sam +-rw-r--r-- root/root 2147245 2014-09-23 23:39 ./usr/share/htslib-test/ce#large_seq.sam +-rw-r--r-- root/root 1634 2014-09-23 23:39 ./usr/share/htslib-test/ce#tag_depadded.sam +-rw-r--r-- root/root 1646 2014-09-23 23:39 ./usr/share/htslib-test/ce#tag_padded.sam +-rw-r--r-- root/root 1325 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap.sam +-rw-r--r-- root/root 2769 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap1.sam +-rw-r--r-- root/root 5547 2014-09-23 23:39 ./usr/share/htslib-test/ce#unmap2.sam +-rw-r--r-- root/root 1060702 2014-09-23 23:39 ./usr/share/htslib-test/ce.fa +-rw-r--r-- root/root 230 2014-09-23 23:39 ./usr/share/htslib-test/ce.fa.fai +-rwxr-xr-x root/root 4351 2014-09-23 23:39 ./usr/share/htslib-test/compare_sam.pl +-rw-r--r-- root/root 2409 2014-09-23 23:39 ./usr/share/htslib-test/fieldarith.c +-rw-r--r-- root/root 916 2014-09-23 23:39 ./usr/share/htslib-test/fieldarith.sam +-rw-r--r-- root/root 6824 2014-09-23 23:39 ./usr/share/htslib-test/hfile.c +-rw-r--r-- root/root 4751 2014-09-23 23:39 ./usr/share/htslib-test/sam.c +-rw-r--r-- root/root 8946 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-api.c +-rw-r--r-- root/root 1936 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-api.out +-rw-r--r-- root/root 3802 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-sweep.c +-rw-r--r-- root/root 92 2014-09-23 23:39 ./usr/share/htslib-test/test-vcf-sweep.out +-rwxr-xr-x root/root 6226 2014-09-23 23:39 ./usr/share/htslib-test/test.pl +-rw-r--r-- root/root 4830 2014-09-23 23:39 ./usr/share/htslib-test/test_view.c +-rwxr-xr-x root/root 2329 2014-09-23 23:39 ./usr/share/htslib-test/test_view.pl +-rw-r--r-- root/root 0 2014-09-23 23:39 ./usr/share/htslib-test/xx#blank.sam +-rw-r--r-- root/root 905485 2014-09-23 23:39 ./usr/share/htslib-test/xx#large_aux.sam +-rw-r--r-- root/root 651 2014-09-23 23:39 ./usr/share/htslib-test/xx#large_aux2.sam +-rw-r--r-- root/root 254 2014-09-23 23:39 ./usr/share/htslib-test/xx#minimal.sam +-rw-r--r-- root/root 304 2014-09-23 23:39 ./usr/share/htslib-test/xx#pair.sam +-rw-r--r-- root/root 517 2014-09-23 23:39 ./usr/share/htslib-test/xx#rg.sam +-rw-r--r-- root/root 267 2014-09-23 23:39 ./usr/share/htslib-test/xx#triplet.sam +-rw-r--r-- root/root 320 2014-09-23 23:39 ./usr/share/htslib-test/xx#unsorted.sam +-rw-r--r-- root/root 51 2014-09-23 23:39 ./usr/share/htslib-test/xx.fa +-rw-r--r-- root/root 29 2014-09-23 23:39 ./usr/share/htslib-test/xx.fa.fai + + +tabix_1.1-1_amd64.deb ───────────────────── new debian package, version 2.0. - size 189978 bytes: control archive=933 bytes. + size 189910 bytes: control archive=930 bytes. 844 bytes, 19 lines control 298 bytes, 5 lines md5sums Package: tabix Source: htslib - Version: 1.0-2 + Version: 1.1-1 Architecture: amd64 Maintainer: Debian Med Packaging Team <[email protected]> - Installed-Size: 762 + Installed-Size: 760 Depends: libc6 (>= 2.15), zlib1g (>= 1:1.2.0.2) Section: science Priority: optional @@ -1485,20 +1496,20 @@ tabix_1.0-2_amd64.deb . This version of tabix is built from the HTSlib source. -drwxr-xr-x root/root 0 2014-09-16 20:37 ./ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/bin/ --rwxr-xr-x root/root 326968 2014-09-16 20:37 ./usr/bin/bgzip --rwxr-xr-x root/root 405176 2014-09-16 20:37 ./usr/bin/tabix -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/doc/tabix/ --rw-r--r-- root/root 624 2014-09-16 20:28 ./usr/share/doc/tabix/changelog.Debian.gz --rw-r--r-- root/root 7175 2014-08-18 21:03 ./usr/share/doc/tabix/copyright -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/ -drwxr-xr-x root/root 0 2014-09-16 20:37 ./usr/share/man/man1/ -lrwxrwxrwx root/root 0 2014-09-16 20:37 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz --rw-r--r-- root/root 2477 2014-09-16 20:37 ./usr/share/man/man1/tabix.1.gz +drwxr-xr-x root/root 0 2014-09-24 21:29 ./ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/bin/ +-rwxr-xr-x root/root 326968 2014-09-24 21:29 ./usr/bin/bgzip +-rwxr-xr-x root/root 405176 2014-09-24 21:29 ./usr/bin/tabix +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/doc/tabix/ +-rw-r--r-- root/root 816 2014-09-24 21:25 ./usr/share/doc/tabix/changelog.Debian.gz +-rw-r--r-- root/root 5779 2014-09-24 21:20 ./usr/share/doc/tabix/copyright +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/ +drwxr-xr-x root/root 0 2014-09-24 21:29 ./usr/share/man/man1/ +lrwxrwxrwx root/root 0 2014-09-24 21:29 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz +-rw-r--r-- root/root 2483 2014-09-24 21:29 ./usr/share/man/man1/tabix.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ @@ -1534,8 +1545,8 @@ The following packages will be REMOVED: sbuild-build-depends-htslib-dummy* sbuild-build-depends-lintian-dummy* t1utils* zlib1g-dev* 0 upgraded, 0 newly installed, 53 to remove and 0 not upgraded. -After this operation, 39.5 MB disk space will be freed. -(Reading database ... 13875 files and directories currently installed.) +After this operation, 39.0 MB disk space will be freed. +(Reading database ... 13879 files and directories currently installed.) Removing sbuild-build-depends-lintian-dummy (0.invalid.0) ... Removing lintian (2.5.27) ... Purging configuration files for lintian (2.5.27) ... @@ -1576,8 +1587,8 @@ Removing sbuild-build-depends-core-dummy (0.invalid.0) ... Removing t1utils (1.37-2.1) ... Removing zlib1g-dev:amd64 (1:1.2.8.dfsg-2) ... Removing debhelper (9.20140817) ... -Removing man-db (2.6.7.1-1) ... -Purging configuration files for man-db (2.6.7.1-1) ... +Removing man-db (2.7.0.1-1) ... +Purging configuration files for man-db (2.7.0.1-1) ... Removing bsdmainutils (9.0.5) ... Purging configuration files for bsdmainutils (9.0.5) ... Removing file (1:5.19-2) ... @@ -1590,14 +1601,14 @@ Purging configuration files for groff-base (1.22.2-8) ... Removing libasprintf0c2:amd64 (0.19.2-2) ... Removing libcroco3:amd64 (0.6.8-3) ... Purging configuration files for libcroco3:amd64 (0.6.8-3) ... -Removing libglib2.0-0:amd64 (2.40.0-5) ... -Purging configuration files for libglib2.0-0:amd64 (2.40.0-5) ... +Removing libglib2.0-0:amd64 (2.42.0-1) ... +Purging configuration files for libglib2.0-0:amd64 (2.42.0-1) ... Removing libffi6:amd64 (3.1-2) ... Purging configuration files for libffi6:amd64 (3.1-2) ... Removing libmagic1:amd64 (1:5.19-2) ... Purging configuration files for libmagic1:amd64 (1:5.19-2) ... -Removing libpipeline1:amd64 (1.3.0-1) ... -Purging configuration files for libpipeline1:amd64 (1.3.0-1) ... +Removing libpipeline1:amd64 (1.3.1-1) ... +Purging configuration files for libpipeline1:amd64 (1.3.1-1) ... Removing libunistring0:amd64 (0.9.3-5.2) ... Purging configuration files for libunistring0:amd64 (0.9.3-5.2) ... Removing libxml2:amd64 (2.9.1+dfsg1-4) ... @@ -1609,20 +1620,20 @@ Processing triggers for libc-bin (2.19-11) ... └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 -Build-Space: 38796 -Build-Time: 108 +Build-Space: 37700 +Build-Time: 82 Distribution: unstable Host Architecture: amd64 -Install-Time: 14 -Job: htslib_1.0-2.dsc +Install-Time: 25 +Job: htslib_1.1-1.dsc Lintian: pass Machine Architecture: amd64 Package: htslib -Package-Time: 130 -Source-Version: 1.0-2 -Space: 38796 +Package-Time: 114 +Source-Version: 1.1-1 +Space: 37700 Status: successful -Version: 1.0-2 +Version: 1.1-1 ──────────────────────────────────────────────────────────────────────────────── -Finished at 20140916-2037 -Build needed 00:02:10, 38796k disc space +Finished at 20140924-2129 +Build needed 00:01:54, 37700k disc space -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
