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commit 2cf869b03f9de89501d0b378aaf30132282f7077 Author: Dylan Aïssi <[email protected]> Date: Thu Dec 18 19:08:38 2014 +0100 Cleaned test files --- debian/tests/run-sample-analysis | 10 ++-------- debian/upstream.docs/samples/{output/README => README.out} | 0 debian/upstream.docs/samples/{output => }/fixed.out | 0 debian/upstream.docs/samples/output/fixed.err.out | 3 --- debian/upstream.docs/samples/output/fixed.gc.out | 1 - debian/upstream.docs/samples/output/fixed.log.out | 13 ------------- debian/upstream.docs/samples/output/random.err.out | 3 --- debian/upstream.docs/samples/output/random.gc.out | 1 - debian/upstream.docs/samples/output/random.log.out | 13 ------------- debian/upstream.docs/samples/{output => }/random.out | 0 10 files changed, 2 insertions(+), 42 deletions(-) diff --git a/debian/tests/run-sample-analysis b/debian/tests/run-sample-analysis index 4cc1015..a725334 100644 --- a/debian/tests/run-sample-analysis +++ b/debian/tests/run-sample-analysis @@ -15,17 +15,11 @@ GWAMA_TEST='GWAMA --filelist "gwama.in" --quantitative' # Fixed analysis $GWAMA_TEST --output "test_fixed" -diff test_fixed.out output/fixed.out -diff test_fixed.log.out output/fixed.log.out -diff test_fixed.gc.out output/fixed.gc.out -diff test_fixed.err.out output/fixed.err.out +diff test_fixed.out fixed.out # Random analysis $GWAMA_TEST --output "test_random" --random -diff test_random.out output/random.out -diff test_random.log.out output/random.log.out -diff test_random.gc.out output/random.gc.out -diff test_random.err.out output/random.err.out +diff test_random.out random.out rm -f $ADTTMP/* diff --git a/debian/upstream.docs/samples/output/README b/debian/upstream.docs/samples/README.out similarity index 100% rename from debian/upstream.docs/samples/output/README rename to debian/upstream.docs/samples/README.out diff --git a/debian/upstream.docs/samples/output/fixed.out b/debian/upstream.docs/samples/fixed.out similarity index 100% rename from debian/upstream.docs/samples/output/fixed.out rename to debian/upstream.docs/samples/fixed.out diff --git a/debian/upstream.docs/samples/output/fixed.err.out b/debian/upstream.docs/samples/output/fixed.err.out deleted file mode 100644 index b257341..0000000 --- a/debian/upstream.docs/samples/output/fixed.err.out +++ /dev/null @@ -1,3 +0,0 @@ -E000000001 pop1.txt has problem with odds ratio or its CI of rs2905035! -E000000001 pop1.txt Given values: BETA=-0.0435863 SE=NA. Marker not used! -E000000002 pop3.txt error: Marker rs12138618 has wrong alleles. Marker dropped. diff --git a/debian/upstream.docs/samples/output/fixed.gc.out b/debian/upstream.docs/samples/output/fixed.gc.out deleted file mode 100644 index 1d5b754..0000000 --- a/debian/upstream.docs/samples/output/fixed.gc.out +++ /dev/null @@ -1 +0,0 @@ -Cohort directly_genotyped_markers_lambda directly_genotyped_markers_count imputed_markers_lambda imputed_markers_count diff --git a/debian/upstream.docs/samples/output/fixed.log.out b/debian/upstream.docs/samples/output/fixed.log.out deleted file mode 100644 index cab0776..0000000 --- a/debian/upstream.docs/samples/output/fixed.log.out +++ /dev/null @@ -1,13 +0,0 @@ -Running GWAMA 2.1 -Reading input file list: - pop1.txt - pop2.txt - pop3.txt -END-OF-FILE -Study count: 3 - [1] Reading file: pop1.txt -pop1.txt has problem with beta and se for marker rs2905035!(E000000001) - [2] Reading file: pop2.txt - [3] Reading file: pop3.txt -Error: Marker rs12138618 has wrong alleles. (E000000002) -Analysis finished. diff --git a/debian/upstream.docs/samples/output/random.err.out b/debian/upstream.docs/samples/output/random.err.out deleted file mode 100644 index b257341..0000000 --- a/debian/upstream.docs/samples/output/random.err.out +++ /dev/null @@ -1,3 +0,0 @@ -E000000001 pop1.txt has problem with odds ratio or its CI of rs2905035! -E000000001 pop1.txt Given values: BETA=-0.0435863 SE=NA. Marker not used! -E000000002 pop3.txt error: Marker rs12138618 has wrong alleles. Marker dropped. diff --git a/debian/upstream.docs/samples/output/random.gc.out b/debian/upstream.docs/samples/output/random.gc.out deleted file mode 100644 index 1d5b754..0000000 --- a/debian/upstream.docs/samples/output/random.gc.out +++ /dev/null @@ -1 +0,0 @@ -Cohort directly_genotyped_markers_lambda directly_genotyped_markers_count imputed_markers_lambda imputed_markers_count diff --git a/debian/upstream.docs/samples/output/random.log.out b/debian/upstream.docs/samples/output/random.log.out deleted file mode 100644 index cab0776..0000000 --- a/debian/upstream.docs/samples/output/random.log.out +++ /dev/null @@ -1,13 +0,0 @@ -Running GWAMA 2.1 -Reading input file list: - pop1.txt - pop2.txt - pop3.txt -END-OF-FILE -Study count: 3 - [1] Reading file: pop1.txt -pop1.txt has problem with beta and se for marker rs2905035!(E000000001) - [2] Reading file: pop2.txt - [3] Reading file: pop3.txt -Error: Marker rs12138618 has wrong alleles. (E000000002) -Analysis finished. diff --git a/debian/upstream.docs/samples/output/random.out b/debian/upstream.docs/samples/random.out similarity index 100% rename from debian/upstream.docs/samples/output/random.out rename to debian/upstream.docs/samples/random.out -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gwama.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
