Author: tbooth-guest Date: 2015-01-13 14:27:07 +0000 (Tue, 13 Jan 2015) New Revision: 18573
Added: trunk/packages/vsearch/trunk/ trunk/packages/vsearch/trunk/debian/ trunk/packages/vsearch/trunk/debian/changelog trunk/packages/vsearch/trunk/debian/compat trunk/packages/vsearch/trunk/debian/control trunk/packages/vsearch/trunk/debian/copyright trunk/packages/vsearch/trunk/debian/docs trunk/packages/vsearch/trunk/debian/install trunk/packages/vsearch/trunk/debian/rules trunk/packages/vsearch/trunk/debian/source/ trunk/packages/vsearch/trunk/debian/source/format trunk/packages/vsearch/trunk/debian/watch Removed: trunk/packages/vsearch/debian/ Log: And here's the actual files Added: trunk/packages/vsearch/trunk/debian/changelog =================================================================== --- trunk/packages/vsearch/trunk/debian/changelog (rev 0) +++ trunk/packages/vsearch/trunk/debian/changelog 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,5 @@ +vsearch (1.0.7) trusty; urgency=low + + * Initial package + + -- Tim Booth <[email protected]> Fri, 09 Jan 2015 17:13:35 +0000 Added: trunk/packages/vsearch/trunk/debian/compat =================================================================== --- trunk/packages/vsearch/trunk/debian/compat (rev 0) +++ trunk/packages/vsearch/trunk/debian/compat 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1 @@ +9 Added: trunk/packages/vsearch/trunk/debian/control =================================================================== --- trunk/packages/vsearch/trunk/debian/control (rev 0) +++ trunk/packages/vsearch/trunk/debian/control 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,27 @@ +Source: vsearch +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Tim Booth <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 9), zlib1g-dev, libbz2-dev, python-markdown +Standards-Version: 3.9.6 +Homepage: https://github.com/torognes/vsearch/ + +Package: vsearch +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: tool for processing metagenomic sequences + Open and free 64-bit multithreaded tool for processing metagenomic sequences, + including searching, clustering, chimera detection, dereplication, sorting, + masking and shuffling + . + The aim of this project is to create an alternative to the USEARCH tool + developed by Robert C. Edgar (2010). The new tool should: + . + - have open source code with an appropriate open source license + - be free of charge, gratis + - have a 64-bit design that handles very large databases and much more + than 4GB of memory + - be as accurate or more accurate than usearch + - be as fast or faster than usearch Added: trunk/packages/vsearch/trunk/debian/copyright =================================================================== --- trunk/packages/vsearch/trunk/debian/copyright (rev 0) +++ trunk/packages/vsearch/trunk/debian/copyright 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,12 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: VSEARCH +Upstream-Contact: Torbjørn Rognes +Source: https://github.com/torognes/vsearch/ + +Files: * +Copyright: © 2014-2015 Torbjorn Rognes & Tomas Flouri +License: Affero-GPL-3 + +Files: debian/* +Copyright: © 2014 Tim Booth <[email protected]> +License: GPL-3 Added: trunk/packages/vsearch/trunk/debian/docs =================================================================== --- trunk/packages/vsearch/trunk/debian/docs (rev 0) +++ trunk/packages/vsearch/trunk/debian/docs 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1 @@ +*.html Added: trunk/packages/vsearch/trunk/debian/install =================================================================== --- trunk/packages/vsearch/trunk/debian/install (rev 0) +++ trunk/packages/vsearch/trunk/debian/install 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,3 @@ +src/vsearch /usr/bin +src/vsearch-gz /usr/bin +src/vsearch-bz /usr/bin Added: trunk/packages/vsearch/trunk/debian/rules =================================================================== --- trunk/packages/vsearch/trunk/debian/rules (rev 0) +++ trunk/packages/vsearch/trunk/debian/rules 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,36 @@ +#!/usr/bin/make -f +# debian/rules for bowtie +# Andreas Tille <[email protected]> +# GPL + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +# export DEB_BUILD_MAINT_OPTIONS = hardening=+all + +pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p') + +%: + dh $@ --sourcedirectory=src + +override_dh_auto_build: + # See notes in README.source + dh_auto_build -- -f Makefile.BZLIB + dh_auto_clean + dh_auto_build -- -f Makefile.ZLIB + dh_auto_clean + dh_auto_build + markdown_py -f README.html README.md + +override_dh_auto_test: + cd data && tar -xvzf simm.tar.gz + cd test && \ + for t in *.sh ; do \ + bash $$t v ; \ + done + +override_dh_clean: + dh_clean + rm -rf data/simm + find test -mindepth 1 -not -name '*.sh' -delete + rm -f README.html Property changes on: trunk/packages/vsearch/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/vsearch/trunk/debian/source/format =================================================================== --- trunk/packages/vsearch/trunk/debian/source/format (rev 0) +++ trunk/packages/vsearch/trunk/debian/source/format 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/vsearch/trunk/debian/watch =================================================================== --- trunk/packages/vsearch/trunk/debian/watch (rev 0) +++ trunk/packages/vsearch/trunk/debian/watch 2015-01-13 14:27:07 UTC (rev 18573) @@ -0,0 +1,4 @@ +version=3 + +opts="downloadurlmangle=s/\/tree\/(.*)/\/archive\/$1.tar.gz/" \ + https://github.com/torognes/vsearch/ .*/tree/v([0-9.rc-]+) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
