This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository khmer.
commit 43335e39d46a4c833f204ecf64919d2265db5d69 Author: Tim Booth <[email protected]> Date: Sat Jan 31 14:30:59 2015 +0000 New manpage added for the khmer wrapper script --- debian/control | 3 ++- debian/khmer.1.ronn | 33 +++++++++++++++++++++++++++++++++ debian/khmer.manpages | 1 + debian/rules | 2 ++ 4 files changed, 38 insertions(+), 1 deletion(-) diff --git a/debian/control b/debian/control index f708b33..546f4fd 100644 --- a/debian/control +++ b/debian/control @@ -13,7 +13,8 @@ Build-Depends: python-screed, python-setuptools (>= 3.3), zlib1g-dev, libbz2-dev, - python-nose + python-nose, + ruby-ronn Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/khmer.git Vcs-Git: git://anonscm.debian.org/debian-med/khmer.git diff --git a/debian/khmer.1.ronn b/debian/khmer.1.ronn new file mode 100644 index 0000000..18c282f --- /dev/null +++ b/debian/khmer.1.ronn @@ -0,0 +1,33 @@ +khmer(1) -- k-mer counting, filtering and graph traversal FTW! +========== + +khmer is a library and toolkit for doing k-mer-based dataset analysis +and transformations + +## SYNOPSIS + + khmer `<prog_name>` [options] <args> + +eg. + + khmer `load-into-counting` -x 1e8 -k 20 reads.kh reads.fa.gz + +## USAGE + +This manpage only describes the `khmer` wrapper script. To find out about +the software and how to use it please see /usr/share/doc/khmer or else +http://khmer.readthedocs.org/. + +On Debian/Ubuntu, package maintainers avoid putting large collections of scripts +directly into the system PATH. Rather, a single wrapper script is used to launch +the script you want to use; therefore if the khmer instructions say to run +`load-into-counting.py ...whatever...` you need to prefix this command with +`khmer`. Furthermore, the .py extension may be omitted, resulting in a +command of the format shown above. + +If you don't like this, simply add /usr/lib/khmer/bin to your personal PATH. + +## AUTHOR + +This wrapper and manapage were written by Tim Booth, who takes no credit for +khmer itself. diff --git a/debian/khmer.manpages b/debian/khmer.manpages new file mode 100644 index 0000000..0f65186 --- /dev/null +++ b/debian/khmer.manpages @@ -0,0 +1 @@ +debian/*.1 diff --git a/debian/rules b/debian/rules index a9ccca8..29811f1 100755 --- a/debian/rules +++ b/debian/rules @@ -11,7 +11,9 @@ override_dh_auto_build: dh_auto_build ln -s "`pwd`"/.pybuild/pythonX.Y_*/build/khmer/*.so khmer && \ ./setup.py build_sphinx + ronn -r --manual=khmer --organization='Michigan State University' debian/khmer.1.ronn override_dh_auto_clean: dh_auto_clean rm -f khmer/*.so + rm -f *.1 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/khmer.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
