This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository jaligner.
commit 3c17c9180ceebcec4235f9ce9fb426080da5193f Author: Tim Booth <[email protected]> Date: Sun Feb 1 18:53:41 2015 +0000 initial debianization --- debian/bin/jaligner | 3 +++ debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 15 +++++++++++++++ debian/install | 1 + debian/jlibs | 1 + debian/manifest | 4 ++++ debian/rules | 20 ++++++++++++++++++++ debian/source/format | 1 + 9 files changed, 51 insertions(+) diff --git a/debian/bin/jaligner b/debian/bin/jaligner new file mode 100755 index 0000000..8ed6f78 --- /dev/null +++ b/debian/bin/jaligner @@ -0,0 +1,3 @@ +#!/bin/sh + +exec java -Xms128m -Xmx512m -jar /usr/share/java/jaligner.jar "$@" diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..208da31 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +jaligner (1.0) trusty; urgency=medium + + * Initial release. (Closes: #XXXXXX) + + -- Tim Booth <[email protected]> Sun, 01 Feb 2015 17:30:31 +0000 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..45a4fb7 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +8 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..e27e1cd --- /dev/null +++ b/debian/control @@ -0,0 +1,15 @@ +Source: jaligner +Section: science +Priority: extra +Maintainer: Tim Booth <[email protected]> +Build-Depends: debhelper (>= 9), default-jdk, junit4, javahelper, + icedtea-netx-common +Standards-Version: 3.9.5 + +Package: jaligner +Architecture: all +Depends: ${java:Depends}, ${misc:Depends}, default-jre +Description: implementation of the Smith-Waterman algorithm with Gotoh's improvement + JAligner is an open source Java implementation of the Smith-Waterman + algorithm with Gotoh's improvement for biological local pairwise sequence + alignment with the affine gap penalty model. diff --git a/debian/install b/debian/install new file mode 100644 index 0000000..3501fc5 --- /dev/null +++ b/debian/install @@ -0,0 +1 @@ +debian/bin/* /usr/bin/ diff --git a/debian/jlibs b/debian/jlibs new file mode 100644 index 0000000..c8c90c6 --- /dev/null +++ b/debian/jlibs @@ -0,0 +1 @@ +jaligner.jar diff --git a/debian/manifest b/debian/manifest new file mode 100644 index 0000000..45cda57 --- /dev/null +++ b/debian/manifest @@ -0,0 +1,4 @@ +usr/share/java/jaligner.jar: + Main-Class: jaligner.ui.AlignCommandLine + Manifest-Version: 1.0 + Class-Path: /usr/share/jaligner/ diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..01cb00c --- /dev/null +++ b/debian/rules @@ -0,0 +1,20 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +export CLASSPATH=/usr/share/icedtea-web/netx.jar + +%: + dh $@ --with javahelper + +override_dh_auto_build: + jh_build -J jaligner.jar src + +override_dh_install: + dh_install src/jaligner /usr/share/jaligner + find debian/jaligner/usr/share/jaligner -type f -a \( -name '*.java' -o -name '*.html' \) -delete + +override_dh_auto_clean: + rm -f jaligner.jar diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/jaligner.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
