This is an automated email from the git hooks/post-receive script. tbooth-guest pushed a commit to branch master in repository jaligner.
commit 14872051eb7db5d918da40b82b31197d59e590ca Author: Tim Booth <[email protected]> Date: Sun Feb 1 19:10:01 2015 +0000 Add a manpage for our little wrapper script --- debian/control | 2 +- debian/jaligner.ronn | 16 ++++++++++++++++ debian/manpages | 1 + debian/rules | 2 ++ jaligner.jar | Bin 164489 -> 0 bytes 5 files changed, 20 insertions(+), 1 deletion(-) diff --git a/debian/control b/debian/control index e27e1cd..0d028de 100644 --- a/debian/control +++ b/debian/control @@ -3,7 +3,7 @@ Section: science Priority: extra Maintainer: Tim Booth <[email protected]> Build-Depends: debhelper (>= 9), default-jdk, junit4, javahelper, - icedtea-netx-common + icedtea-netx-common, ruby-ronn Standards-Version: 3.9.5 Package: jaligner diff --git a/debian/jaligner.ronn b/debian/jaligner.ronn new file mode 100644 index 0000000..abd1aa1 --- /dev/null +++ b/debian/jaligner.ronn @@ -0,0 +1,16 @@ +jaligner(1) -- Smith-Waterman algorithm with Gotoh's improvement +========== + +## SYNOPSIS + +`jaligner` <s1> <s2> <matrix> <open> <extend> + +Or just type `jaligner` to see the GUI. + +## EXAMPLES + +`jaligner` p53_{human,mouse}.fasta BLOSUM62 10 0.5 + +## Homepage + + http://jaligner.sourceforge.net/ diff --git a/debian/manpages b/debian/manpages new file mode 100644 index 0000000..0f65186 --- /dev/null +++ b/debian/manpages @@ -0,0 +1 @@ +debian/*.1 diff --git a/debian/rules b/debian/rules index 01cb00c..90277d1 100755 --- a/debian/rules +++ b/debian/rules @@ -11,6 +11,7 @@ export CLASSPATH=/usr/share/icedtea-web/netx.jar override_dh_auto_build: jh_build -J jaligner.jar src + ronn -r debian/jaligner.ronn override_dh_install: dh_install src/jaligner /usr/share/jaligner @@ -18,3 +19,4 @@ override_dh_install: override_dh_auto_clean: rm -f jaligner.jar + rm -f debian/*.1 diff --git a/jaligner.jar b/jaligner.jar deleted file mode 100644 index 25ec101..0000000 Binary files a/jaligner.jar and /dev/null differ -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/jaligner.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
