Author: tbooth-guest Date: 2015-02-26 14:51:38 +0000 (Thu, 26 Feb 2015) New Revision: 18862
Modified: trunk/packages/mafft/trunk/debian/changelog trunk/packages/mafft/trunk/debian/links trunk/packages/mafft/trunk/debian/rules Log: The latest version of MAFFT leaves an empty file in the bin directory. Presumably at some point this will actually contain code, so I've added a rule to remove the file but only if it is actually empty. In the next version if the file is non-empty you'll get an error. Also I think it is worth having mafft-profile in /usr/bin. QIIME expects it in the path. Other than that, a basic version bump. Modified: trunk/packages/mafft/trunk/debian/changelog =================================================================== --- trunk/packages/mafft/trunk/debian/changelog 2015-02-25 22:07:51 UTC (rev 18861) +++ trunk/packages/mafft/trunk/debian/changelog 2015-02-26 14:51:38 UTC (rev 18862) @@ -1,3 +1,11 @@ +mafft (7.215-0biolinux1) trusty; urgency=medium + + * New upstream. + * Add convoluted cleanup of zero-byte file + * Add mafft-profile to /usr/bin. + + -- Tim Booth <[email protected]> Thu, 26 Feb 2015 12:00:41 +0000 + mafft (7.205-1) unstable; urgency=medium * New upstream version Modified: trunk/packages/mafft/trunk/debian/links =================================================================== --- trunk/packages/mafft/trunk/debian/links 2015-02-25 22:07:51 UTC (rev 18861) +++ trunk/packages/mafft/trunk/debian/links 2015-02-26 14:51:38 UTC (rev 18862) @@ -12,6 +12,7 @@ usr/lib/mafft/bin/mafft-homologs.rb usr/bin/mafft-homologs usr/lib/mafft/bin/mafft usr/bin/mafft +usr/lib/mafft/bin/mafft-profile usr/bin/mafft-profile # override broken symlinks created in Makefile usr/lib/mafft/lib/mafft/mafft-distance usr/lib/mafft/bin/mafft-distance Modified: trunk/packages/mafft/trunk/debian/rules =================================================================== --- trunk/packages/mafft/trunk/debian/rules 2015-02-25 22:07:51 UTC (rev 18861) +++ trunk/packages/mafft/trunk/debian/rules 2015-02-26 14:51:38 UTC (rev 18862) @@ -25,7 +25,12 @@ override_dh_install: $(MAKE) -C core PREFIX=$(CURDIR)/debian/mafft/usr/lib/mafft MANDIR=$(CURDIR)/debian/mafft/usr/share/man/man1 LIBDIR=$(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft install - rm $(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft/*.1 + rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 + # Remove zero-sized file but if it's not zero-sized that's an error. + # If the file doesn't exist that's OK. + ! cd debian/mafft/usr/lib/mafft/bin/ || \ + ! test -s mafft-sparsecore.rb && \ + rm -f mafft-sparsecore.rb override_dh_compress: dh_compress -X test/sample _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
