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commit c11dda0e3cd5edb774fdf9d33a329fe884645ddf Author: Alexandre Mestiashvili <[email protected]> Date: Wed Mar 11 15:52:11 2015 +0100 d/tests/control d/tests/subread-align: new test --- debian/tests/control | 2 ++ debian/tests/subread-align | 13 +++++++++++++ 2 files changed, 15 insertions(+) diff --git a/debian/tests/control b/debian/tests/control index 8d2fc14..415f1e5 100644 --- a/debian/tests/control +++ b/debian/tests/control @@ -3,3 +3,5 @@ Tests: exactSNP Tests: fc-minimal Tests: subjunc + +Tests: subread-align diff --git a/debian/tests/subread-align b/debian/tests/subread-align new file mode 100755 index 0000000..3f1a904 --- /dev/null +++ b/debian/tests/subread-align @@ -0,0 +1,13 @@ +#!/bin/sh + +set -e +workdir=test/subread-align +cd $workdir +tmpdir=$(mktemp -d) +subread-buildindex -o $tmpdir/small1 -M100 ../chr901.fa >/dev/null 2>&1 +subread-align -i $tmpdir/small1 -r data/test-noerror-r1.fq -o $tmpdir/test-tmp.sam1 -H -J >/dev/null 2>&1 +subread-align -u -i $tmpdir/small1 -r data/test-noerror-r1.fq -o $tmpdir/test-tmp.sam2 -H -J >/dev/null 2>&1 +subread-align -i $tmpdir/small1 -r data/test-noerror-r1.fq -R data/test-noerror-r2.fq -o $tmpdir/test-tmp.sam3 -H -J >/dev/null 2>&1 +subread-align -u -i $tmpdir/small1 -r data/test-noerror-r1.fq -R data/test-noerror-r2.fq -o $tmpdir/test-tmp.sam4 -Q -J >/dev/null 2>&1 +subread-align -i $tmpdir/small1 -r data/test-error-r1.fq -R data/test-error-r2.fq -o $tmpdir/test-tmp.sam5 -H -J >/dev/null 2>&1 +subread-align -i $tmpdir/small1 --gzFASTQinput -r data/test-err-mut-r1.fq.gz -R data/test-err-mut-r2.fq.gz -o $tmpdir/test-tmp.sam6 -H -J --rg-id MyTestGroup --rg SM:sample1 --rg TP:1 --rg XX:YY >/dev/null 2>&1 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/subread.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
