This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository gmap.
commit 9619a960b3eb43f3cdd4d36a1a9150ea69780ba3 Merge: 24e5957 88e5821 Author: Alexandre Mestiashvili <[email protected]> Date: Thu Mar 12 16:58:30 2015 +0100 Merge tag 'upstream/2014-12-23' Upstream version 2014-12-23 ChangeLog | 191 ++++ Makefile.in | 2 +- TODO | 3 - VERSION | 2 +- config/ax_ext.m4 | 11 +- configure | 200 ++++- configure.ac | 14 +- src/ChangeLog | 0 src/Makefile.in | 2 +- src/bitpack64-read.h | 4 + src/chimera.c | 59 +- src/chimera.h | 6 +- src/compress.h | 5 +- src/config.h.in | 6 +- src/doublelist.c | 34 +- src/doublelist.h | 6 +- src/dynprog.h | 5 +- src/except.h | 6 +- src/genome128_hr.c | 12 +- src/genomicpos.h | 6 +- src/gmap.c | 160 +++- src/gsnap.c | 241 +++--- src/iit-read.h | 7 +- src/indexdb-write.h | 5 +- src/indexdb.h | 6 +- src/indexdbdef.h | 5 +- src/oligoindex_hr.c | 15 +- src/oligoindex_hr.h | 9 +- src/outbuffer.c | 31 +- src/pair.c | 153 +++- src/pair.h | 10 +- src/popcount.c | 6 +- src/popcount.h | 5 +- src/sam_sort.c | 21 +- src/samheader.c | 90 +- src/samheader.h | 6 +- src/samprint.c | 328 +++++-- src/samprint.h | 8 +- src/samread.c | 138 ++- src/sarray-read.c | 341 ++++++-- src/sequence.h | 7 +- src/splice.c | 763 ++++++++++------ src/stage1.c | 23 +- src/stage1hr.c | 2012 +++++++++++++++++++++++++++++-------------- src/stage1hr.h | 15 +- src/stage2.c | 19 +- src/stage3.c | 571 +++++------- src/stage3.h | 15 +- src/stage3hr.c | 507 +++++++---- src/stage3hr.h | 24 +- src/substring.c | 186 ++-- src/substring.h | 5 +- src/uniqscan.c | 13 +- util/gff3_genes.pl.in | 5 +- util/gff3_introns.pl.in | 5 +- util/gff3_splicesites.pl.in | 5 +- 56 files changed, 4335 insertions(+), 1999 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
