Author: hampt-guest
Date: 2015-03-14 01:22:34 +0000 (Sat, 14 Mar 2015)
New Revision: 18968
Added:
trunk/packages/metastudent-data-3/trunk/debian/
trunk/packages/metastudent-data-3/trunk/debian/README.source
trunk/packages/metastudent-data-3/trunk/debian/changelog
trunk/packages/metastudent-data-3/trunk/debian/compat
trunk/packages/metastudent-data-3/trunk/debian/control
trunk/packages/metastudent-data-3/trunk/debian/copyright
trunk/packages/metastudent-data-3/trunk/debian/rules
trunk/packages/metastudent-data-3/trunk/debian/source/
trunk/packages/metastudent-data-3/trunk/debian/source/format
trunk/packages/metastudent-data-3/trunk/debian/upstream/
trunk/packages/metastudent-data-3/trunk/debian/upstream/metadata
trunk/packages/metastudent-data-3/trunk/debian/watch
Log:
inital check in
Added: trunk/packages/metastudent-data-3/trunk/debian/README.source
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/README.source
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/README.source
2015-03-14 01:22:34 UTC (rev 18968)
@@ -0,0 +1,4 @@
+metastudent-data-3 for Debian
+===========================
+This package provides large (>500MB uncompressed) BLAST databases required by
metastudent.
+The databases are in binary format, and are multi-platform. For this reason
they are installed into /usr/share/metastudent-data-3.
Added: trunk/packages/metastudent-data-3/trunk/debian/changelog
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/changelog
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/changelog 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,5 @@
+metastudent-data-3 (1.0.1-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Tobias Hamp <[email protected]> Sat, 14 Mar 2015 00:43:57 +0200
Added: trunk/packages/metastudent-data-3/trunk/debian/compat
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/compat
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/compat 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1 @@
+8
Added: trunk/packages/metastudent-data-3/trunk/debian/control
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/control
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/control 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,26 @@
+Source: metastudent-data-3
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team
<[email protected]>
+Uploaders: Tobias Hamp <[email protected]>, Laszlo Kajan <[email protected]>
+Build-Depends-Indep: blast2, debhelper (>=8~), rsync
+Standards-Version: 3.9.4
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Vcs-Svn:
svn://svn.debian.org/debian-med/trunk/packages/metastudent-data-3/trunk/
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent-data-3/trunk/
+
+Package: metastudent-data-3
+Architecture: all
+Homepage: http://www.rostlab.org
+Pre-Depends: dpkg (>= 1.15.6~)
+Depends: ${misc:Depends}
+Description: predictor of Gene Ontology terms from protein sequence - data
files
+ Often, only the sequence of a protein is known, but
+ not its functions. Metastudent will try to predict
+ missing functional annotations through homology searches (BLAST).
+ .
+ All predicted functions correspond to Gene Ontology (GO)
+ terms from the Molecular Function Ontology (MFO), the Cellular Component
Ontology (CCO) and the Biological Process
+ Ontology (BPO) and are associated with a reliability score.
+ .
+ This package contains data files for metastudent.
Added: trunk/packages/metastudent-data-3/trunk/debian/copyright
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/copyright
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/copyright 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,25 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: metastudent-data-3
+Upstream-Contact: Tobias Hamp <[email protected]>
+Source: ftp://rostlab.org/metastudent/
+
+Files: *
+Copyright: 2011-2015, Tobias Hamp <[email protected]>
+License: GPL-2+
+
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, see .
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 2 can be found in `/usr/share/common-licenses/GPL-2'
Added: trunk/packages/metastudent-data-3/trunk/debian/rules
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/rules
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/rules 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,11 @@
+#!/usr/bin/make -f
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@ --parallel
+
+DEB_COMPRESS_TYPE ?= xz
+#DEB_COMPRESS_LEVEL ?= -z0v
+override_dh_builddeb:
+ dh_builddeb -- -Z$(DEB_COMPRESS_TYPE) $(DEB_COMPRESS_LEVEL)
Property changes on: trunk/packages/metastudent-data-3/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/metastudent-data-3/trunk/debian/source/format
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/source/format
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/source/format
2015-03-14 01:22:34 UTC (rev 18968)
@@ -0,0 +1 @@
+3.0 (quilt)
Property changes on:
trunk/packages/metastudent-data-3/trunk/debian/source/format
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/metastudent-data-3/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/upstream/metadata
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/upstream/metadata
2015-03-14 01:22:34 UTC (rev 18968)
@@ -0,0 +1,14 @@
+Name: metastudent-data-3
+Contact: Tobias Hamp <[email protected]>
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+Reference:
+ - Author: Tobias Hamp and Rebecca Kassner and Stefan Seemayer and Esmeralda
Vicedo and Christian Schaefer and Dominik Achten and Florian Auer and Ariane
Boehm and Tatjana Braun and Maximilian Hecht and Mark Heron and Peter
Hönigschmid and Thomas A. Hopf and Stefanie Kaufmann and Michael Kiening and
Denis Krompass and Cedric Landerer and Yannick Mahlich and Manfred Roos and
Burkhard Rost
+ Title: 'Homology-based inference sets the bar high for protein function
prediction.'
+ Journal: BMC Bioinformatics
+ Year: 2013
+ Volume: 14
+ Number: 'Suppl 3'
+ Pages: S7
+ DOI: 10.1186/1471-2105-14-S3-S7
+ PMID: 23514582
+ URL: http://www.biomedcentral.com/1471-2105/14/S3/S7/
Added: trunk/packages/metastudent-data-3/trunk/debian/watch
===================================================================
--- trunk/packages/metastudent-data-3/trunk/debian/watch
(rev 0)
+++ trunk/packages/metastudent-data-3/trunk/debian/watch 2015-03-14
01:22:34 UTC (rev 18968)
@@ -0,0 +1,2 @@
+version=3
+opts=pasv
ftp://rostlab.org/metastudent/metastudent-data-([0-9.]+)\.tar\.[bgx]z debian
uupdate
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