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malex-guest pushed a change to branch master
in repository pycorrfit.
from 9ed6aba upload to unstable
new 7516793 debian/get-orig-source: remove freeze_pyinstaller dir
new 9d1050e Imported Upstream version 0.8.6
new 624e27b Merge tag 'upstream/0.8.6'
new 6abdb77 d/changelog: new upstream version d/control: add new
Build-Dependencies d/rules: new doc dir, avoid pdf download
d/pycorrfit.install: update example directory
new 31e451b d/patches: removed the old ones (
wx-migration-tools.patch fix_python_path.patch )
d/patches/fcs_data_set_syntax.patch: add colon after parentheses
d/patches/inst_read_pt3_scripts.patch: force installation of read_pt3_scripts
subdirectory
new d631a9a d/control: set Architecture to any to fix lintian's
complain: arch-independent-package-contains-binary-or-object
d/patches/inst_read_pt3_scripts.patch: add the header
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog.txt | 20 +
MANIFEST.in | 11 +-
PyCorrFit_doc.pdf | Bin 581216 -> 0 bytes
README.md | 2 +-
Readme.txt | 3 +-
bin/pycorrfit | 20 +-
debian/changelog | 9 +
debian/control | 11 +-
debian/get-orig-source | 2 +-
debian/patches/fcs_data_set_syntax.patch | 13 +
debian/patches/fix_python_path.patch | 15 -
debian/patches/inst_read_pt3_scripts.patch | 17 +
debian/patches/series | 4 +-
debian/patches/wx-migration-tools.patch | 105 ---
debian/pycorrfit.install | 4 +-
debian/rules | 6 +-
{doc-src => doc}/Bibliography.bib | 0
.../Images/PyCorrFit_Screenshot_CSFCS.png | Bin
.../Images/PyCorrFit_Screenshot_Main.png | Bin
{doc-src => doc}/Images/PyCorrFit_icon.png | Bin
{doc-src => doc}/Images/PyCorrFit_icon.svg | 0
{doc-src => doc}/Images/PyCorrFit_icon_dark.svg | 0
{doc-src => doc}/Images/PyCorrFit_logo.svg | 0
{doc-src => doc}/Images/PyCorrFit_logo_dark.pdf | Bin
{doc-src => doc}/Images/PyCorrFit_logo_dark.png | Bin
{doc-src => doc}/Images/PyCorrFit_logo_dark.svg | 0
{doc-src => doc}/PyCorrFit_doc.tex | 0
{doc-src => doc}/PyCorrFit_doc_content.tex | 14 +-
{doc-src => doc}/PyCorrFit_doc_models.tex | 0
{doc-src => doc}/README.md | 2 +-
.../ExampleFunc_CS_2D+2D+S+T.txt | 0
.../ExampleFunc_CS_3D+S+T.txt | 0
.../ExampleFunc_Exp_correlated_noise.txt | 0
.../ExampleFunc_SFCS_1C_2D_Autocorrelation.txt | 0
.../ExampleFunc_SFCS_1C_2D_Cross-correlation.txt | 0
.../ExampleFunc_TIRF_zOnly.txt | 0
.../Model_AC_3D+T_confocal.txt | 0
.../Model_Flow_AC_3D_confocal.txt | 0
.../Model_Flow_CC_Backward_3D_confocal.txt | 0
.../Model_Flow_CC_Forward_3D_confocal.txt | 0
.../sample_sessions}/CSFCS_DiO-in-DOPC.pcfs | Bin
.../ConfocalFCS_Alexa488_xcorr.pcfs | Bin
pycorrfit/PyCorrFit.py | 10 +
{src => pycorrfit}/__init__.py | 9 +-
pycorrfit/__main__.py | 34 +
{src => pycorrfit}/doc.py | 103 ++-
{src => pycorrfit}/edclasses.py | 2 +-
pycorrfit/fcs_data_set.py | 739 ++++++++++++++++++
{src => pycorrfit}/fitting.py | 9 +-
{src => pycorrfit}/frontend.py | 713 +++++++++++-------
{src => pycorrfit}/icon.py | 0
src/PyCorrFit.py => pycorrfit/main.py | 122 +--
{src => pycorrfit}/misc.py | 4 +-
{src => pycorrfit}/models/MODEL_TIRF_1C.py | 0
{src => pycorrfit}/models/MODEL_TIRF_2D2D.py | 0
{src => pycorrfit}/models/MODEL_TIRF_3D2D.py | 0
.../models/MODEL_TIRF_3D2Dkin_Ries.py | 0
{src => pycorrfit}/models/MODEL_TIRF_3D3D.py | 0
.../models/MODEL_TIRF_gaussian_1C.py | 0
.../models/MODEL_TIRF_gaussian_3D2D.py | 0
.../models/MODEL_TIRF_gaussian_3D3D.py | 0
.../models/MODEL_classic_gaussian_2D.py | 0
.../models/MODEL_classic_gaussian_3D.py | 0
.../models/MODEL_classic_gaussian_3D2D.py | 0
{src => pycorrfit}/models/__init__.py | 33 +-
pycorrfit/openfile.py | 766 +++++++++++++++++++
{src => pycorrfit}/page.py | 8 +-
{src => pycorrfit}/plotting.py | 4 +-
{src => pycorrfit}/readfiles/__init__.py | 56 +-
{src => pycorrfit}/readfiles/read_ASC_ALV.py | 0
{src => pycorrfit}/readfiles/read_CSV_PyCorrFit.py | 0
{src => pycorrfit}/readfiles/read_FCS_Confocor3.py | 191 +++--
.../readfiles/read_SIN_correlator_com.py | 0
{src => pycorrfit}/readfiles/read_mat_ries.py | 0
pycorrfit/readfiles/read_pt3_PicoQuant.py | 95 +++
pycorrfit/readfiles/read_pt3_scripts/LICENSE | 340 +++++++++
pycorrfit/readfiles/read_pt3_scripts/__init__.py | 0
.../read_pt3_scripts/correlation_methods.py | 134 ++++
.../read_pt3_scripts/correlation_objects.py | 527 +++++++++++++
pycorrfit/readfiles/read_pt3_scripts/fib4.pyx | 60 ++
.../readfiles/read_pt3_scripts/import_methods.py | 190 +++++
{src => pycorrfit}/tools/__init__.py | 28 +-
{src => pycorrfit}/tools/average.py | 4 +-
{src => pycorrfit}/tools/background.py | 8 +-
{src => pycorrfit}/tools/batchcontrol.py | 45 +-
{src => pycorrfit}/tools/chooseimport.py | 6 +-
{src => pycorrfit}/tools/comment.py | 0
{src => pycorrfit}/tools/datarange.py | 0
{src => pycorrfit}/tools/example.py | 0
{src => pycorrfit}/tools/globalfit.py | 4 +-
{src => pycorrfit}/tools/info.py | 4 +-
{src => pycorrfit}/tools/overlaycurves.py | 28 +-
{src => pycorrfit}/tools/parmrange.py | 4 +-
{src => pycorrfit}/tools/plotexport.py | 0
{src => pycorrfit}/tools/simulation.py | 4 +-
{src => pycorrfit}/tools/statistics.py | 4 +-
{src => pycorrfit}/tools/trace.py | 0
{src => pycorrfit}/usermodel.py | 7 +-
setup.py | 51 +-
src/openfile.py | 838 ---------------------
100 files changed, 3889 insertions(+), 1553 deletions(-)
delete mode 100644 PyCorrFit_doc.pdf
create mode 100644 debian/patches/fcs_data_set_syntax.patch
delete mode 100644 debian/patches/fix_python_path.patch
create mode 100644 debian/patches/inst_read_pt3_scripts.patch
delete mode 100644 debian/patches/wx-migration-tools.patch
rename {doc-src => doc}/Bibliography.bib (100%)
rename {doc-src => doc}/Images/PyCorrFit_Screenshot_CSFCS.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_Screenshot_Main.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_icon_dark.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo.svg (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.pdf (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.png (100%)
rename {doc-src => doc}/Images/PyCorrFit_logo_dark.svg (100%)
rename {doc-src => doc}/PyCorrFit_doc.tex (100%)
rename {doc-src => doc}/PyCorrFit_doc_content.tex (99%)
rename {doc-src => doc}/PyCorrFit_doc_models.tex (100%)
rename {doc-src => doc}/README.md (95%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_CS_2D+2D+S+T.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_CS_3D+S+T.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_Exp_correlated_noise.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_SFCS_1C_2D_Autocorrelation.txt
(100%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_SFCS_1C_2D_Cross-correlation.txt
(100%)
rename {external_model_functions =>
examples/external_model_functions}/ExampleFunc_TIRF_zOnly.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/Model_AC_3D+T_confocal.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/Model_Flow_AC_3D_confocal.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/Model_Flow_CC_Backward_3D_confocal.txt (100%)
rename {external_model_functions =>
examples/external_model_functions}/Model_Flow_CC_Forward_3D_confocal.txt (100%)
rename {sample_sessions => examples/sample_sessions}/CSFCS_DiO-in-DOPC.pcfs
(100%)
rename {sample_sessions =>
examples/sample_sessions}/ConfocalFCS_Alexa488_xcorr.pcfs (100%)
create mode 100644 pycorrfit/PyCorrFit.py
rename {src => pycorrfit}/__init__.py (93%)
create mode 100644 pycorrfit/__main__.py
rename {src => pycorrfit}/doc.py (65%)
rename {src => pycorrfit}/edclasses.py (99%)
create mode 100644 pycorrfit/fcs_data_set.py
rename {src => pycorrfit}/fitting.py (99%)
rename {src => pycorrfit}/frontend.py (77%)
rename {src => pycorrfit}/icon.py (100%)
rename src/PyCorrFit.py => pycorrfit/main.py (54%)
rename {src => pycorrfit}/misc.py (98%)
rename {src => pycorrfit}/models/MODEL_TIRF_1C.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_2D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D2Dkin_Ries.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_3D3D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_1C.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_3D2D.py (100%)
rename {src => pycorrfit}/models/MODEL_TIRF_gaussian_3D3D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_2D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_3D.py (100%)
rename {src => pycorrfit}/models/MODEL_classic_gaussian_3D2D.py (100%)
rename {src => pycorrfit}/models/__init__.py (95%)
create mode 100644 pycorrfit/openfile.py
rename {src => pycorrfit}/page.py (99%)
rename {src => pycorrfit}/plotting.py (99%)
rename {src => pycorrfit}/readfiles/__init__.py (86%)
rename {src => pycorrfit}/readfiles/read_ASC_ALV.py (100%)
mode change 100755 => 100644
rename {src => pycorrfit}/readfiles/read_CSV_PyCorrFit.py (100%)
rename {src => pycorrfit}/readfiles/read_FCS_Confocor3.py (75%)
rename {src => pycorrfit}/readfiles/read_SIN_correlator_com.py (100%)
rename {src => pycorrfit}/readfiles/read_mat_ries.py (100%)
create mode 100644 pycorrfit/readfiles/read_pt3_PicoQuant.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/LICENSE
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/__init__.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/correlation_methods.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/correlation_objects.py
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/fib4.pyx
create mode 100644 pycorrfit/readfiles/read_pt3_scripts/import_methods.py
rename {src => pycorrfit}/tools/__init__.py (91%)
rename {src => pycorrfit}/tools/average.py (99%)
rename {src => pycorrfit}/tools/background.py (99%)
rename {src => pycorrfit}/tools/batchcontrol.py (85%)
rename {src => pycorrfit}/tools/chooseimport.py (99%)
rename {src => pycorrfit}/tools/comment.py (100%)
rename {src => pycorrfit}/tools/datarange.py (100%)
rename {src => pycorrfit}/tools/example.py (100%)
rename {src => pycorrfit}/tools/globalfit.py (99%)
rename {src => pycorrfit}/tools/info.py (99%)
rename {src => pycorrfit}/tools/overlaycurves.py (96%)
rename {src => pycorrfit}/tools/parmrange.py (98%)
rename {src => pycorrfit}/tools/plotexport.py (100%)
rename {src => pycorrfit}/tools/simulation.py (99%)
rename {src => pycorrfit}/tools/statistics.py (99%)
rename {src => pycorrfit}/tools/trace.py (100%)
rename {src => pycorrfit}/usermodel.py (98%)
delete mode 100644 src/openfile.py
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