Author: osallou Date: 2015-03-22 11:17:41 +0000 (Sun, 22 Mar 2015) New Revision: 18989
Added: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control Removed: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control Log: [svn-buildpackage] Tagging mapsembler2 2.2.3+dfsg-2 Deleted: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog =================================================================== --- trunk/packages/mapsembler2/trunk/debian/changelog 2015-03-22 09:30:47 UTC (rev 18985) +++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog 2015-03-22 11:17:41 UTC (rev 18989) @@ -1,62 +0,0 @@ -mapsembler2 (2.2.3+dfsg-2) UNRELEASED; urgency=medium - - * Some DEP5 fixes - * Fix clean target - Closes: #766791 - * cme fix dpkg-control - - -- Andreas Tille <[email protected]> Sun, 26 Oct 2014 17:42:21 +0100 - -mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium - - * New upstream release - * Fix some compilation issues - * Fix FTBS on non x86 (Closes: #765285). - - -- Olivier Sallou <[email protected]> Fri, 19 Sep 2014 13:41:47 +0200 - -mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium - - [Gilles Filippini <[email protected]> ] - * Support hdf5 1.8.13 new packaging layout (Closes: #758730). - * Fix FTBFS due to broken help2man call in debian/rules. - - -- Olivier Sallou <[email protected]> Wed, 20 Aug 2014 12:21:26 +0200 - -mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium - - * Fix kissreads file conflict with discoSnp (Closes: #758648). - - -- Olivier Sallou <[email protected]> Tue, 19 Aug 2014 08:53:07 +0200 - -mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium - - * New upstream release - Change of license to AGPL-3 - - -- Olivier Sallou <[email protected]> Thu, 29 May 2014 15:07:28 +0200 - -mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low - - * New upstream release - - -- Olivier Sallou <[email protected]> Fri, 21 Feb 2014 15:42:22 +0100 - -mapsembler2 (2.0.31-1) unstable; urgency=low - - * New upstream release - - -- Olivier Sallou <[email protected]> Fri, 21 Feb 2014 15:13:29 +0100 - -mapsembler2 (2.0.5+dfsg-2) unstable; urgency=low - - * d/control: Add missing build dep - - -- Olivier Sallou <[email protected]> Thu, 06 Feb 2014 08:06:55 +0100 - -mapsembler2 (2.0.5+dfsg-1) unstable; urgency=medium - - * First debian package (Closes: #737099). - - -- Olivier Sallou <[email protected]> Sat, 01 Feb 2014 16:55:29 +0100 - Copied: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog (from rev 18987, trunk/packages/mapsembler2/trunk/debian/changelog) =================================================================== --- trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog (rev 0) +++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/changelog 2015-03-22 11:17:41 UTC (rev 18989) @@ -0,0 +1,65 @@ +mapsembler2 (2.2.3+dfsg-2) UNRELEASED; urgency=medium + + * Some DEP5 fixes + * Fix clean target + Closes: #766791 + * cme fix dpkg-control + * [O. Sallou] d/control: limit target archs, upstream code uses some code + not valid on other archs, could not find an appropriate patch for this + (lower #765285 to normal). + + -- Andreas Tille <[email protected]> Sun, 26 Oct 2014 17:42:21 +0100 + +mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium + + * New upstream release + * Fix some compilation issues + * Fix FTBS on non x86 (Closes: #765285). + + -- Olivier Sallou <[email protected]> Fri, 19 Sep 2014 13:41:47 +0200 + +mapsembler2 (2.2.1+dfsg-3) unstable; urgency=medium + + [Gilles Filippini <[email protected]> ] + * Support hdf5 1.8.13 new packaging layout (Closes: #758730). + * Fix FTBFS due to broken help2man call in debian/rules. + + -- Olivier Sallou <[email protected]> Wed, 20 Aug 2014 12:21:26 +0200 + +mapsembler2 (2.2.1+dfsg-2) unstable; urgency=medium + + * Fix kissreads file conflict with discoSnp (Closes: #758648). + + -- Olivier Sallou <[email protected]> Tue, 19 Aug 2014 08:53:07 +0200 + +mapsembler2 (2.2.1+dfsg-1) unstable; urgency=medium + + * New upstream release + Change of license to AGPL-3 + + -- Olivier Sallou <[email protected]> Thu, 29 May 2014 15:07:28 +0200 + +mapsembler2 (2.1.2+dfsg-1) unstable; urgency=low + + * New upstream release + + -- Olivier Sallou <[email protected]> Fri, 21 Feb 2014 15:42:22 +0100 + +mapsembler2 (2.0.31-1) unstable; urgency=low + + * New upstream release + + -- Olivier Sallou <[email protected]> Fri, 21 Feb 2014 15:13:29 +0100 + +mapsembler2 (2.0.5+dfsg-2) unstable; urgency=low + + * d/control: Add missing build dep + + -- Olivier Sallou <[email protected]> Thu, 06 Feb 2014 08:06:55 +0100 + +mapsembler2 (2.0.5+dfsg-1) unstable; urgency=medium + + * First debian package (Closes: #737099). + + -- Olivier Sallou <[email protected]> Sat, 01 Feb 2014 16:55:29 +0100 + Deleted: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control =================================================================== --- trunk/packages/mapsembler2/trunk/debian/control 2015-03-22 09:30:47 UTC (rev 18985) +++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control 2015-03-22 11:17:41 UTC (rev 18989) @@ -1,43 +0,0 @@ -Source: mapsembler2 -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Olivier Sallou <[email protected]>, - Andreas Tille <[email protected]> -Section: science -Priority: optional -Build-Depends: debhelper (>= 9), - cmake, - bc, - zlib1g-dev, - help2man, - libhdf5-dev, - libcppunit-dev, - libboost-dev -Standards-Version: 3.9.6 -Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mapsembler2/trunk/ -Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/ -Homepage: http://colibread.inria.fr/mapsembler2/ - -Package: mapsembler2 -Architecture: any -Depends: ${misc:Depends}, - ${shlibs:Depends}, - zlib1g, - bc -Description: bioinformatics targeted assembly software - Mapsembler2 is a targeted assembly software. - It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) - and a set of input sequences (starters). - . - It first determines if each starter is read-coherent, e.g. whether reads - confirm the presence of each starter in the original sequence. - Then for each read-coherent starter, Mapsembler2 outputs its sequence - neighborhood as a linear sequence or as a graph, depending on the user choice. - . - Mapsembler2 may be used for (not limited to): - - Validate an assembled sequence (input as starter), e.g. from a de - Bruijn graph assembly where read-coherence was not enforced. - - Checks if a gene (input as starter) has an homolog in a set of reads - - Checks if a known enzyme is present in a metagenomic NGS read set. - - Enrich unmappable reads by extending them, possibly making them mappable - - Checks what happens at the extremities of a contig - - Remove contaminants or symbiont reads from a read set Copied: trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control (from rev 18987, trunk/packages/mapsembler2/trunk/debian/control) =================================================================== --- trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control (rev 0) +++ trunk/packages/mapsembler2/tags/2.2.3+dfsg-2/debian/control 2015-03-22 11:17:41 UTC (rev 18989) @@ -0,0 +1,43 @@ +Source: mapsembler2 +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]>, + Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 9), + cmake, + bc, + zlib1g-dev, + help2man, + libhdf5-dev, + libcppunit-dev, + libboost-dev +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/mapsembler2/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mapsembler2/trunk/ +Homepage: http://colibread.inria.fr/mapsembler2/ + +Package: mapsembler2 +Architecture: amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x +Depends: ${misc:Depends}, + ${shlibs:Depends}, + zlib1g, + bc +Description: bioinformatics targeted assembly software + Mapsembler2 is a targeted assembly software. + It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) + and a set of input sequences (starters). + . + It first determines if each starter is read-coherent, e.g. whether reads + confirm the presence of each starter in the original sequence. + Then for each read-coherent starter, Mapsembler2 outputs its sequence + neighborhood as a linear sequence or as a graph, depending on the user choice. + . + Mapsembler2 may be used for (not limited to): + - Validate an assembled sequence (input as starter), e.g. from a de + Bruijn graph assembly where read-coherence was not enforced. + - Checks if a gene (input as starter) has an homolog in a set of reads + - Checks if a known enzyme is present in a metagenomic NGS read set. + - Enrich unmappable reads by extending them, possibly making them mappable + - Checks what happens at the extremities of a contig + - Remove contaminants or symbiont reads from a read set _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
