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commit 46147b695b26ae0641687337748b2aee41d02ab6 Merge: 8fb2f31 af8304a Author: Afif Elghraoui <[email protected]> Date: Thu May 21 19:40:02 2015 -0700 Merge tag 'upstream/0_20150520+2004' Upstream version 0~20150520+2004 README.atac | 100 + README.compiling | 34 +- README.meryl | 156 ++ atac-driver/atac.pl | 40 +- configure.sh | 4 +- libkmer/Make.include | 6 +- libkmer/percentCovered.C | 66 - libseq/fastaFile.C | 4 +- libseq/fastqFile.C | 2 + libutil/intervalList.H | 2 +- libutil/kazlib/Make.include | 27 - libutil/kazlib/blast.pl | 33 - libutil/kazlib/dict.c | 1238 ---------- libutil/kazlib/dict.h | 142 -- libutil/kazlib/docs/CHANGES | 290 --- libutil/kazlib/docs/MUST_READ | 25 - libutil/kazlib/docs/README | 66 - libutil/kazlib/docs/docs.ist | 4 - libutil/kazlib/docs/docs.ltx | 4155 ---------------------------------- libutil/kazlib/drivers/dict-main.c | 300 --- libutil/kazlib/drivers/except-main.c | 57 - libutil/kazlib/drivers/hash-main.c | 187 -- libutil/kazlib/drivers/list-main.c | 152 -- libutil/kazlib/drivers/sfx-main.c | 41 - libutil/kazlib/except.c | 347 --- libutil/kazlib/except.h | 147 -- libutil/kazlib/hash.c | 837 ------- libutil/kazlib/hash.h | 238 -- libutil/kazlib/list.c | 766 ------- libutil/kazlib/list.h | 152 -- libutil/kazlib/sfx.c | 1138 ---------- libutil/kazlib/sfx.h | 46 - meryl/Make.include | 19 +- meryl/asmMerQC.C | 396 ---- {libkmer => meryl}/kmer-mask.C | 0 meryl/m-heap.H | 152 -- meryl/m.C | 118 - meryl/mapMers-depth.C | 216 +- meryl/maskMers.C | 7 + meryl/testPositionBias.C | 117 - 40 files changed, 465 insertions(+), 11362 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kmer-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
