This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib.
commit 4fc92f5aab173eedbefacef6a2514a5c2d903449 Author: Charles Plessy <[email protected]> Date: Mon May 25 12:40:23 2015 +0900 Update symbols file. Note that there are missing symbols. #MISSING: 1.2.1# cram_byte_array_stop_decode_char@Base 1.0 #MISSING: 1.2.1# cram_external_decode_block@Base 1.0 #MISSING: 1.2.1# cram_external_encode@Base 1.0 #MISSING: 1.2.1# download_and_open@Base 1.0 --- debian/libhts1.symbols | 39 ++++++++++++++++++++++++++++++++++----- 1 file changed, 34 insertions(+), 5 deletions(-) diff --git a/debian/libhts1.symbols b/debian/libhts1.symbols index e15b4e3..385db3b 100644 --- a/debian/libhts1.symbols +++ b/debian/libhts1.symbols @@ -3,6 +3,7 @@ libhts.so.1 libhts1 #MINVER# MD5_Init@Base 1.0 MD5_Update@Base 1.0 _reader_next_line@Base 1.0 + _regidx_build_index@Base 1.2.1 _vcf_parse_format@Base 1.0 bam_aux2A@Base 1.0 bam_aux2Z@Base 1.0 @@ -47,6 +48,7 @@ libhts.so.1 libhts1 #MINVER# bcf_add_filter@Base 1.0 bcf_calc_ac@Base 1.0 bcf_clear@Base 1.0 + bcf_copy@Base 1.2.1 bcf_destroy@Base 1.0 bcf_dup@Base 1.0 bcf_empty1@Base 1.0 @@ -125,6 +127,7 @@ libhts.so.1 libhts1 #MINVER# bcf_sr_set_regions@Base 1.0 bcf_sr_set_samples@Base 1.0 bcf_sr_set_targets@Base 1.0 + bcf_sr_strerror@Base 1.2.1 bcf_subset@Base 1.0 bcf_subset_format@Base 1.0 bcf_sweep_bwd@Base 1.0 @@ -187,7 +190,7 @@ libhts.so.1 libhts1 #MINVER# cram_byte_array_len_encode_init@Base 1.0 cram_byte_array_len_encode_store@Base 1.0 cram_byte_array_stop_decode_block@Base 1.0 - cram_byte_array_stop_decode_char@Base 1.0 +#MISSING: 1.2.1# cram_byte_array_stop_decode_char@Base 1.0 cram_byte_array_stop_decode_free@Base 1.0 cram_byte_array_stop_decode_init@Base 1.0 cram_byte_array_stop_encode@Base 1.0 @@ -195,6 +198,7 @@ libhts.so.1 libhts1 #MINVER# cram_byte_array_stop_encode_init@Base 1.0 cram_byte_array_stop_encode_store@Base 1.0 cram_close@Base 1.0 + cram_codec_to_id@Base 1.2.1 cram_compress_block@Base 1.0 cram_content_type2str@Base 1.0 cram_decode_TD@Base 1.0 @@ -204,6 +208,7 @@ libhts.so.1 libhts1 #MINVER# cram_decode_slice_mt@Base 1.0 cram_decode_slice_thread@Base 1.0 cram_decoder_init@Base 1.0 + cram_dependent_data_series@Base 1.2.1 cram_dopen@Base 1.0 cram_encode_compression_header@Base 1.0 cram_encode_container@Base 1.0 @@ -211,14 +216,16 @@ libhts.so.1 libhts1 #MINVER# cram_encoder_init@Base 1.0 cram_encoding2str@Base 1.0 cram_eof@Base 1.0 - cram_external_decode_block@Base 1.0 +#MISSING: 1.2.1# cram_external_decode_block@Base 1.0 cram_external_decode_char@Base 1.0 cram_external_decode_free@Base 1.0 cram_external_decode_init@Base 1.0 cram_external_decode_int@Base 1.0 - cram_external_encode@Base 1.0 +#MISSING: 1.2.1# cram_external_encode@Base 1.0 + cram_external_encode_char@Base 1.2.1 cram_external_encode_free@Base 1.0 cram_external_encode_init@Base 1.0 + cram_external_encode_int@Base 1.2.1 cram_external_encode_store@Base 1.0 cram_flush@Base 1.0 cram_flush_container@Base 1.0 @@ -291,7 +298,7 @@ libhts.so.1 libhts1 #MINVER# cram_write_file_def@Base 1.0 debug_buffer@Base 1.0 debug_buffers@Base 1.0 - download_and_open@Base 1.0 +#MISSING: 1.2.1# download_and_open@Base 1.0 expand_cache_path@Base 1.0 fai_build@Base 1.0 fai_build_core@Base 1.0 @@ -300,7 +307,7 @@ libhts.so.1 libhts1 #MINVER# fai_load@Base 1.0 fai_read@Base 1.0 fai_save@Base 1.0 -#MISSING: 1.1# faidx_fetch_nseq@Base 1.0 + faidx_fetch_nseq@Base 1.2.1 faidx_fetch_seq@Base 1.0 faidx_has_seq@Base 1.0 faidx_iseq@Base 1.1 @@ -318,6 +325,7 @@ libhts.so.1 libhts1 #MINVER# hfile_oflags@Base 1.0 hflush@Base 1.0 hgetc2@Base 1.0 + hisremote@Base 1.2.1 hopen@Base 1.0 hopen_net@Base 1.0 hpeek@Base 1.0 @@ -327,9 +335,13 @@ libhts.so.1 libhts1 #MINVER# hrec_add_idx@Base 1.0 hseek@Base 1.0 hts_close@Base 1.0 + hts_detect_format@Base 1.2.1 hts_file_type@Base 1.0 + hts_format_description@Base 1.2.1 hts_get_bgzfp@Base 1.0 + hts_get_format@Base 1.2.1 hts_getline@Base 1.0 + hts_hopen@Base 1.2.1 hts_idx_destroy@Base 1.0 hts_idx_finish@Base 1.0 hts_idx_get_meta@Base 1.0 @@ -352,6 +364,7 @@ libhts.so.1 libhts1 #MINVER# hts_readlines@Base 1.0 hts_readlist@Base 1.0 hts_set_fai_filename@Base 1.0 + hts_set_opt@Base 1.2.1 hts_set_threads@Base 1.0 hts_useek@Base 1.0 hts_utell@Base 1.0 @@ -444,8 +457,23 @@ libhts.so.1 libhts1 #MINVER# pool_create@Base 1.0 pool_destroy@Base 1.0 pool_free@Base 1.0 + rans_compress@Base 1.2.1 + rans_compress_O0@Base 1.2.1 + rans_compress_O1@Base 1.2.1 + rans_uncompress@Base 1.2.1 + rans_uncompress_O0@Base 1.2.1 + rans_uncompress_O1@Base 1.2.1 refs2id@Base 1.0 refs_free@Base 1.0 + regidx_destroy@Base 1.2.1 + regidx_init@Base 1.2.1 + regidx_insert@Base 1.2.1 + regidx_nregs@Base 1.2.1 + regidx_overlap@Base 1.2.1 + regidx_parse_bed@Base 1.2.1 + regidx_parse_tab@Base 1.2.1 + regidx_seq_names@Base 1.2.1 + regidx_seq_nregs@Base 1.2.1 sam_format1@Base 1.0 sam_hdr_PG_ID@Base 1.0 sam_hdr_add@Base 1.0 @@ -479,6 +507,7 @@ libhts.so.1 libhts1 #MINVER# sam_parse1@Base 1.0 sam_read1@Base 1.0 sam_write1@Base 1.0 + seq_nt16_int@Base 1.2.1 seq_nt16_str@Base 1.0 seq_nt16_table@Base 1.0 string_alloc@Base 1.0 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
