This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository jellyfish.
commit b36cc9587b514ed3ed316e040b670921951e850c Merge: 0cd8047 79fce41 Author: Charles Plessy <[email protected]> Date: Wed Jun 17 18:05:47 2015 +0900 Merge tag 'upstream/2.2.0' Upstream version 2.2.0 # gpg: Signature made Wed 17 Jun 2015 18:05:43 JST using RSA key ID B3443334 # gpg: Good signature from "Charles Plessy <[email protected]>" .gitignore | 1 - Makefile.am | 16 +- README.md | 31 ++- configure.ac | 59 +++- examples/jf_count_dump/Makefile | 7 + examples/jf_count_dump/README | 52 ++++ examples/jf_count_dump/jf_count_dump.cc | 80 ++++++ examples/swig/README.md | 1 + examples/swig/dump.pl | 8 + examples/swig/dump.py | 8 + examples/swig/dump.rb | 9 + examples/swig/query.pl | 8 + examples/swig/query.py | 9 + examples/swig/query.rb | 9 + include/jellyfish/bloom_filter.hpp | 1 + include/jellyfish/generator_manager.hpp | 2 +- include/jellyfish/large_hash_array.hpp | 2 +- include/jellyfish/mer_overlap_sequence_parser.hpp | 29 +- include/jellyfish/rectangular_binary_matrix.hpp | 4 +- include/jellyfish/simple_circular_buffer.hpp | 1 + include/jellyfish/whole_sequence_parser.hpp | 15 +- jellyfish.spec.in | 83 ++++++ lib/generator_manager.cc | 11 +- m4/.gitignore | 3 +- m4/m4-ax_perl_ext.m4 | 135 +++++++++ m4/m4-ax_pkg_swig.m4 | 135 +++++++++ m4/m4-ax_python_devel.m4 | 324 ++++++++++++++++++++++ m4/m4-ax_ruby_ext.m4 | 102 +++++++ m4/m4-ax_swig_enable_cxx.m4 | 53 ++++ m4/m4-ax_swig_python.m4 | 64 +++++ sub_commands/jellyfish.cc | 4 + swig/Makefile.am | 68 +++++ swig/Readme.md | 30 +- swig/perl5/t/test_mer_file.t | 12 +- swig/python/__init__.py | 1 + swig/python/test_mer_file.py | 10 +- swig/ruby/test_mer_file.rb | 10 +- swig/string_mers.i | 6 + tests/compat.sh.in | 8 + tests/swig_perl.sh | 17 ++ tests/swig_python.sh | 17 ++ tests/swig_ruby.sh | 19 ++ unit_tests/test_mer_overlap_sequence_parser.cc | 12 + unit_tests/test_whole_sequence_parser.cc | 7 + 44 files changed, 1411 insertions(+), 72 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/jellyfish.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
