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commit e4e9c118bca3de23827a5272bde0d3fe0c158a7d Author: Afif Elghraoui <a...@ghraoui.name> Date: Wed Jul 29 22:43:58 2015 -0700 Finalize manpage for sdpMatcher Use information from source code to populate the Description section. --- debian/sdpMatcher.1 | 24 +++++++++++++++++++++--- 1 file changed, 21 insertions(+), 3 deletions(-) diff --git a/debian/sdpMatcher.1 b/debian/sdpMatcher.1 index 64378df..f012463 100644 --- a/debian/sdpMatcher.1 +++ b/debian/sdpMatcher.1 @@ -1,9 +1,27 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.46.4. .TH SDPMATCHER "1" "July 2015" "sdpMatcher 3ca7fe8" "User Commands" .SH NAME -sdpMatcher \- description of program +sdpMatcher \- nucleotide sequence matching using sparse dynamic programming +.SH SYNOPSIS +.B sdpMatcher +.I query +.I target +.I k +.RB [ \-indelRate +.IR delta ] +.RB [ \-showalign ] +.RB [ \-printsw ] +.RB [ \-noRefine ] +.RB [ \-indel +.IR i ] +.RB [ \-local ] +.RB [ \-match +.IR m ] +.RB [ \-sdpIndel +.IR i ] .SH DESCRIPTION -usage: sdpMatcher query target k [\-indelRate delta] [\-showalign] [\-printsw] [\-noRefine] [\-indel i] [ \fB\-local\fR ] [\-match m] [\-sdpIndel i] +Performs sparse dynamic programming (SDP) between pairs of sequences as they +are given in two FASTA files, called \fIquery\fR and \fItarget\fR for +convenience. \fIk\fR is the size of the k-mer used for the SDP algorithm. .SH SEE ALSO .BR blasr (1) .BR loadPulses (1) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blasr.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit