This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-cobra.
commit 68334d95a9223519586f1e9614d25f7187f6218e Merge: 4aa43cd eb3fb84 Author: Afif Elghraoui <[email protected]> Date: Tue Aug 4 18:52:36 2015 -0700 Merge tag 'upstream/0.4.0b2' Upstream version 0.4.0b2 .travis.yml | 15 +- INSTALL.md | 10 +- appveyor.yml | 14 +- cobra/VERSION | 2 +- cobra/core/Gene.py | 39 +- cobra/core/Metabolite.py | 2 +- cobra/core/Model.py | 26 +- cobra/core/Object.py | 41 +- cobra/core/Reaction.py | 32 +- cobra/core/Species.py | 15 +- cobra/io/json.py | 203 +- cobra/io/mat.py | 25 +- cobra/io/sbml.py | 4 +- cobra/io/sbml3.py | 390 +- cobra/manipulation/modify.py | 75 +- cobra/test/__init__.py | 2 +- cobra/test/data/mini.json | 1345 +- cobra/test/data/mini.mat | Bin 14752 -> 14352 bytes cobra/test/data/mini.pickle | Bin 10952 -> 25348 bytes cobra/test/data/mini_cobra.xml | 342 +- cobra/test/data/mini_fbc1.xml | 387 +- cobra/test/data/mini_fbc2.xml | 1416 +- cobra/test/data/mini_fbc2.xml.bz2 | Bin 0 -> 4939 bytes cobra/test/data/mini_fbc2.xml.gz | Bin 0 -> 5637 bytes cobra/test/data/salmonella_fbc.xml | 77257 ----------------------------------- cobra/test/data/textbook.xml | 1562 - cobra/test/data/textbook.xml.gz | Bin 0 -> 16329 bytes cobra/test/data/textbook_fva.json | 1 + cobra/test/data/update_pickles.py | 115 +- cobra/test/flux_analysis.py | 52 +- cobra/test/io_tests.py | 80 +- cobra/test/unit_tests.py | 3 + documentation_builder/io.ipynb | 37 +- setup.py | 3 +- 34 files changed, 3767 insertions(+), 79728 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
