This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository bedtools.
commit 67fd21dbb6ac593b78e681c90252eab4c221b36e Author: Charles Plessy <[email protected]> Date: Fri Sep 4 16:58:33 2015 +0200 Remove patch applied upstream. --- ...int32_t-signature-for-QuickString.-Resolv.patch | 162 --------------------- debian/patches/series | 1 - 2 files changed, 163 deletions(-) diff --git a/debian/patches/0001-settle-on-uint32_t-signature-for-QuickString.-Resolv.patch b/debian/patches/0001-settle-on-uint32_t-signature-for-QuickString.-Resolv.patch deleted file mode 100644 index e96f725..0000000 --- a/debian/patches/0001-settle-on-uint32_t-signature-for-QuickString.-Resolv.patch +++ /dev/null @@ -1,162 +0,0 @@ -From: arq5x <[email protected]> -Date: Wed, 15 Jul 2015 15:15:23 -0600 -Bug-Debian: http://bugs.debian.org/791830 -Forwarded-Upstream: Patch is from upstream Git -Subject: [PATCH] settle on uint32_t signature for QuickString. Resolves #267 - and #271? - ---- - src/coverageFile/coverageFile.cpp | 24 ++++++++++++------------ - src/utils/general/QuickString.cpp | 27 ++++++++++++++------------- - src/utils/general/QuickString.h | 6 +++--- - 3 files changed, 29 insertions(+), 28 deletions(-) - ---- a/src/coverageFile/coverageFile.cpp -+++ b/src/coverageFile/coverageFile.cpp -@@ -78,11 +78,11 @@ void CoverageFile::giveFinalReport(Recor - float depthPct = (float)basesAtDepth / (float)_totalQueryLen; - - _finalOutput = "all\t"; -- _finalOutput.append(depth); -+ _finalOutput.append(static_cast<uint32_t>(depth)); - _finalOutput.append("\t"); -- _finalOutput.append(basesAtDepth); -+ _finalOutput.append(static_cast<uint32_t>(basesAtDepth)); - _finalOutput.append("\t"); -- _finalOutput.append(_totalQueryLen); -+ _finalOutput.append(static_cast<uint32_t>(_totalQueryLen)); - _finalOutput.append("\t"); - format(depthPct); - -@@ -133,7 +133,7 @@ size_t CoverageFile::countBasesAtDepth(s - - void CoverageFile::doCounts(RecordOutputMgr *outputMgr, RecordKeyVector &hits) - { -- _finalOutput = hits.size(); -+ _finalOutput = static_cast<uint32_t>(hits.size()); - outputMgr->printRecord(hits.getKey(), _finalOutput); - } - -@@ -142,9 +142,9 @@ void CoverageFile::doPerBase(RecordOutpu - //loop through all bases in query, printing full record and metrcis for each - const Record * queryRec = hits.getKey(); - for (size_t i= 0; i < _queryLen; i++) { -- _finalOutput = i +1; -+ _finalOutput = static_cast<uint32_t>(i+1); - _finalOutput.append("\t"); -- _finalOutput.append(_depthArray[i]); -+ _finalOutput.append(static_cast<uint32_t>(_depthArray[i])); - - outputMgr->printRecord(queryRec, _finalOutput); - } -@@ -165,11 +165,11 @@ void CoverageFile::doHist(RecordOutputMg - size_t numBasesAtDepth = iter->second; - float coveredBases = (float)numBasesAtDepth / (float)_queryLen; - -- _finalOutput = depth; -+ _finalOutput = static_cast<uint32_t>(depth); - _finalOutput.append("\t"); -- _finalOutput.append(numBasesAtDepth); -+ _finalOutput.append(static_cast<uint32_t>(numBasesAtDepth)); - _finalOutput.append("\t"); -- _finalOutput.append(_queryLen); -+ _finalOutput.append(static_cast<uint32_t>(_queryLen)); - _finalOutput.append("\t"); - format(coveredBases); - -@@ -183,11 +183,11 @@ void CoverageFile::doDefault(RecordOutpu - size_t nonZeroBases = _queryLen - countBasesAtDepth(0); - float coveredBases = (float)nonZeroBases / (float)_queryLen; - -- _finalOutput = hits.size(); -+ _finalOutput = static_cast<uint32_t>(hits.size()); - _finalOutput.append("\t"); -- _finalOutput.append(nonZeroBases); -+ _finalOutput.append(static_cast<uint32_t>(nonZeroBases)); - _finalOutput.append("\t"); -- _finalOutput.append(_queryLen); -+ _finalOutput.append(static_cast<uint32_t>(_queryLen)); - _finalOutput.append("\t"); - format(coveredBases); - ---- a/src/utils/general/QuickString.cpp -+++ b/src/utils/general/QuickString.cpp -@@ -105,11 +105,11 @@ QuickString &QuickString::operator = (ui - return *this; - } - --QuickString &QuickString::operator = (size_t val) { -- clear(); -- append(val); -- return *this; --} -+// QuickString &QuickString::operator = (size_t val) { -+// clear(); -+// append(val); -+// return *this; -+// } - - QuickString &QuickString::operator = (float val) { - clear(); -@@ -158,10 +158,11 @@ QuickString &QuickString::operator += (u - return *this; - } - --QuickString &QuickString::operator += (size_t num) { -- append(num); -- return *this; --} -+// QuickString &QuickString::operator += (size_t num) { -+// append(num); -+// return *this; -+// } -+ - QuickString &QuickString::operator += (float num) { - append(num); - return *this; -@@ -261,12 +262,12 @@ void QuickString::append(int num) { - } - - void QuickString::append(uint32_t num) { -- int2str((int)num, *this, true); -+ int2str((int)num, *this, true); - } - --void QuickString::append(size_t num) { -- int2str((int)num, *this, true); --} -+// void QuickString::append(size_t num) { -+// int2str((int)num, *this, true); -+// } - - void QuickString::append(float num) { - append(ToString(num)); ---- a/src/utils/general/QuickString.h -+++ b/src/utils/general/QuickString.h -@@ -38,7 +38,7 @@ public: - QuickString &operator = (char); - QuickString &operator = (int); - QuickString &operator = (uint32_t); -- QuickString &operator = (size_t); -+ //QuickString &operator = (size_t); - QuickString &operator = (float); - QuickString &operator = (double); - QuickString &operator += (const QuickString &); -@@ -47,7 +47,7 @@ public: - QuickString &operator += (char); - QuickString &operator += (int); - QuickString &operator += (uint32_t); -- QuickString &operator += (size_t); -+ //QuickString &operator += (size_t); - QuickString &operator += (float); - QuickString &operator += (double); - -@@ -73,7 +73,7 @@ public: - //for better performance. - void append(int num); - void append(uint32_t num); -- void append(size_t num); -+ //void append(size_t num); - void append(float num); - void append(double num); - diff --git a/debian/patches/series b/debian/patches/series index de905d3..aeb5e3a 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1,3 +1,2 @@ gzstream.h.patch fix_test_script.patch -0001-settle-on-uint32_t-signature-for-QuickString.-Resolv.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bedtools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
