This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbalign.
commit f0ce7fc9b9b667e011e36d13bf9465212b903dd0 Author: Afif Elghraoui <[email protected]> Date: Mon Sep 7 14:29:33 2015 -0700 Create a pbalign package with no Python prefix * Place the scripts and manpages generated from building python-pbalign into pbalign * Remove python-pkg-resources dependency from python-pbalign and add it to pbalign, since it's only necessary for the scripts to work (and not the library itself). --- debian/control | 22 +++++++++++++++++++++- debian/rules | 6 ++++-- 2 files changed, 25 insertions(+), 3 deletions(-) diff --git a/debian/control b/debian/control index 3579e7e..65978e4 100644 --- a/debian/control +++ b/debian/control @@ -17,10 +17,11 @@ Homepage: https://github.com/PacificBiosciences/pbalign Vcs-Git: git://anonscm.debian.org/debian-med/pbalign.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/pbalign.git -Package: python-pbalign +Package: pbalign Architecture: all Depends: ${misc:Depends}, ${python:Depends}, + python-pbalign, python-pkg-resources, blasr Recommends: python-pbh5tools, @@ -36,6 +37,25 @@ Description: map Pacific Biosciences reads to reference DNA sequences . This package is part of the SMRTAnalysis suite. +Package: python-pbalign +Architecture: all +Depends: ${misc:Depends}, + ${python:Depends}, + blasr +Recommends: python-pbh5tools, + hdf5-tools +Suggests: bowtie2, + gmap, + python-pbalign-doc +Description: map Pacific Biosciences reads to reference DNA sequences (Python2) + pbalign aligns PacBio reads to reference sequences, filters aligned + reads according to user-specific filtering criteria, and converts the + output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) + format. + . + pbalign is part of the SMRTAnalysis suite. This package provides the + Python library backend. + Package: python-pbalign-doc Section: doc Architecture: all diff --git a/debian/rules b/debian/rules index 253f061..6230d3a 100755 --- a/debian/rules +++ b/debian/rules @@ -10,7 +10,7 @@ export PYBUILD_NAME = pbalign BUILDDIR = $(CURDIR)/debian/python-pbalign BINDIR=$(BUILDDIR)/usr/bin HELP2MAN = help2man --no-info --version-string $(DEB_VERSION_UPSTREAM) -MANDIR = $(BUILDDIR)/usr/share/man/man1 +MANDIR = $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/man/man1 %: LC_ALL=C.UTF-8 dh $@ --with=python2 --buildsystem=pybuild @@ -53,4 +53,6 @@ override_dh_install: mv $(BINDIR)/$$script.py $(BINDIR)/$$script; \ mv $(MANDIR)/$$script.py.1 $(MANDIR)/$$script.1; \ done - + # Place executables in the pbalign package + mkdir -p $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin + mv $(BINDIR)/* $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbalign.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
