This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository microbegps.
commit 703278b597d3131658e8b7a12127b602fd068373 Author: Andreas Tille <[email protected]> Date: Mon May 4 08:19:09 2015 +0000 Inject initial packaging for microbegps --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 21 +++++++++++++++++++++ debian/copyright | 11 +++++++++++ debian/rules | 23 +++++++++++++++++++++++ debian/source/format | 1 + debian/upstream/metadata | 12 ++++++++++++ debian/watch | 3 +++ 8 files changed, 77 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..f0b5f68 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +microbegps (1.0.0-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Mon, 04 May 2015 10:18:29 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..6a04d4b --- /dev/null +++ b/debian/control @@ -0,0 +1,21 @@ +Source: microbegps +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.6 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/microbegps/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/microbegps/trunk/ +Homepage: http://sourceforge.net/projects/microbegps/ + +Package: microbegps +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Explorative Taxonomic Profiling Tool for Metagenomic Data + MicrobeGPS is a bioinformatics tool for the analysis of metagenomic + sequencing data. The goal is to profile the composition of metagenomic + communities as accurately as possible and present the results to the + user in a convenient manner. One main focus is reliability: the tool + calculates quality metrics for the estimated candidates and allows the + user to identify false candidates easily. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..c76e73d --- /dev/null +++ b/debian/copyright @@ -0,0 +1,11 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: <pkg> +Source: <path_to_download> + +Files: * +Copyright: © 20xx-20yy <upstream> +License: <license> + +Files: debian/* +Copyright: © 2014 maintainername <[email protected]> +License: <license> diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..58ec00b --- /dev/null +++ b/debian/rules @@ -0,0 +1,23 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# alternatively to manually set those variables you can +# include /usr/share/cdbs/1/rules/buildvars.mk +# and use what is set there. Any hint whether dh might set variables in +# a similar manner are welcome. + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..f47198b --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: Martin S. Lindner and Bernhard Y. Renard + Title: Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS + Journal: PLoS One + Year: 2015 + Volume: 10 + Number: 2 + Pages: e0117711 + DOI: 10.1371/journal.pone.0117711 + PMID: 25643362 + URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117711 + eprint: http://www.plosone.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pone.0117711&representation=PDF diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..8e950a0 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 + +http://sf.net/microbegps/MicrobeGPS-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/microbegps.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
