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daube-guest pushed a change to branch master
in repository bamtools.
from ba80e50 Upload to unstable
new 00cf2a2 Imported Upstream version 2.4.0+dfsg
new e21f2f2 Merge tag 'upstream/2.4.0+dfsg'
new e0a9522 Correct d/watch to add +dfsg to repacked tarball
new f964536 gbp pq import/export to refresh package queue
new 53fe449 Update d/changelog for version 2.4.0
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 2 +-
debian/changelog | 7 ++++
.../0001-ignore-thirdparty-and-fix-jsoncpp.patch | 33 +++++++++-------
.../patches/0002-support-out-of-source-build.patch | 18 ++++++---
...om-ExportHeader-function-use-install-inst.patch | 45 +++++++++++++---------
...ls-statically-with-libbamtools-utils-as-w.patch | 22 -----------
...bamtools-to-lib.-Installing-libraries-to-.patch | 14 +++++--
debian/patches/0006-Doxygen-reproducibility | 15 +++++---
debian/patches/series | 1 -
debian/watch | 3 +-
docs/Doxyfile | 2 +-
src/api/BamAlignment.h | 8 ++--
src/api/BamAux.h | 6 +++
src/api/BamReader.cpp | 6 +--
src/api/BamWriter.h | 2 +-
src/api/CMakeLists.txt | 2 +-
src/api/SamHeader.cpp | 2 +
src/api/SamHeader.h | 3 ++
src/api/SamProgram.cpp | 1 +
src/api/SamProgram.h | 2 +
src/api/SamReadGroup.cpp | 2 +
src/api/SamReadGroup.h | 3 ++
src/api/SamSequence.cpp | 2 +
src/api/SamSequence.h | 3 ++
src/api/internal/io/HostAddress_p.cpp | 2 +-
src/api/internal/io/HttpHeader_p.cpp | 3 +-
src/api/internal/io/TcpSocketEngine_p.h | 2 +-
src/api/internal/sam/SamFormatParser_p.cpp | 24 ++++++++++++
src/api/internal/sam/SamFormatParser_p.h | 2 +-
src/api/internal/sam/SamFormatPrinter_p.cpp | 31 +++++++++++++++
src/api/internal/sam/SamFormatPrinter_p.h | 2 +-
src/api/internal/sam/SamHeaderValidator_p.h | 6 +--
src/toolkit/CMakeLists.txt | 2 +-
src/toolkit/bamtools.cpp | 2 +-
src/toolkit/bamtools_filter.h | 2 +-
src/toolkit/bamtools_resolve.cpp | 2 -
src/toolkit/bamtools_sort.h | 2 +-
src/toolkit/bamtools_split.h | 2 +-
src/utils/bamtools_fasta.cpp | 2 +-
39 files changed, 192 insertions(+), 98 deletions(-)
delete mode 100644
debian/patches/0004-Link-bamtools-statically-with-libbamtools-utils-as-w.patch
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