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commit 0c3107db637ee3a3dd28563641ad8d8caa5ebb27 Author: Michael R. Crusoe <[email protected]> Date: Tue Sep 29 20:09:52 2015 -0700 ship docs; fix typo --- debian/doc-base.manual | 16 ++++++++++++++++ debian/doc-base.quickstart | 16 ++++++++++++++++ debian/docs | 3 +++ debian/patches/finish-rename | 2 +- debian/rules | 4 ++++ 5 files changed, 40 insertions(+), 1 deletion(-) diff --git a/debian/doc-base.manual b/debian/doc-base.manual new file mode 100644 index 0000000..8527746 --- /dev/null +++ b/debian/doc-base.manual @@ -0,0 +1,16 @@ +Document: snap-aligner-manual +Title: Running SNAP: the snap-aligner manual +Author: The SNAP team +Abstract: Scalable Nucleotide Alignment Program + SNAP is a new sequence aligner that is 3-20x faster and just as accurate as + existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 + processors, and supports a rich error model that lets it cheaply match reads + with more differences from the reference than other tools. This gives SNAP up + to 2x lower error rates than existing tools (in some cases) and lets it match + larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or + gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, + duplicate marking, and BAM indexing. +Section: Science/Biology + +Format: PDF +Files: /usr/share/doc/snap-aligner/Manual.pdf.gz diff --git a/debian/doc-base.quickstart b/debian/doc-base.quickstart new file mode 100644 index 0000000..729e6ee --- /dev/null +++ b/debian/doc-base.quickstart @@ -0,0 +1,16 @@ +Document: snap-aligner-quickstart +Title: SNAP Quick Start: the snap-aligner quick start guide +Author: The SNAP team +Abstract: Scalable Nucleotide Alignment Program + SNAP is a new sequence aligner that is 3-20x faster and just as accurate as + existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 + processors, and supports a rich error model that lets it cheaply match reads + with more differences from the reference than other tools. This gives SNAP up + to 2x lower error rates than existing tools (in some cases) and lets it match + larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or + gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, + duplicate marking, and BAM indexing. +Section: Science/Biology + +Format: PDF +Files: /usr/share/doc/snap-aligner/QuickStart.pdf.gz diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..85e8190 --- /dev/null +++ b/debian/docs @@ -0,0 +1,3 @@ +docs/Manual.pdf +docs/QuickStart.pdf +README.md diff --git a/debian/patches/finish-rename b/debian/patches/finish-rename index 457f13d..b6156ad 100644 --- a/debian/patches/finish-rename +++ b/debian/patches/finish-rename @@ -50,7 +50,7 @@ Description: Change the name of program in docs { WriteErrorMessage( - "Usage: snap <command> [<options>]\n" -+ "Usage: snap-alinger <command> [<options>]\n" ++ "Usage: snap-aligner <command> [<options>]\n" "Commands:\n" " index build a genome index\n" " single align single-end reads\n" diff --git a/debian/rules b/debian/rules index 5511f2a..1b31a31 100755 --- a/debian/rules +++ b/debian/rules @@ -22,3 +22,7 @@ override_dh_auto_build: help2man --no-discard-stderr --no-info --version-string="${VERSION}" \ --name "scalable nucleotide alignment program" \ --help-option=" " ./SNAPCommand > debian/SNAPCommand.1 + +override_dh_auto_clean: + dh_auto_clean + rm -f debian/*.1 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/snap-aligner.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
