This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se.
commit 0b8b894a8363a99307721c13749d75a8f7d7cdb4 Author: Afif Elghraoui <[email protected]> Date: Fri Oct 30 21:53:05 2015 -0700 Create a separate package for architecture-independent files --- debian/control | 21 ++++++++++++++++++++- debian/trnascan-se-common.install | 2 ++ debian/trnascan-se.install | 2 ++ 3 files changed, 24 insertions(+), 1 deletion(-) diff --git a/debian/control b/debian/control index 993bd06..00f8e36 100644 --- a/debian/control +++ b/debian/control @@ -14,7 +14,8 @@ Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, - ${perl:Depends} + ${perl:Depends}, + trnascan-se-common (= ${source:Version}) Description: detection of transfer RNA genes in genomic sequence tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described @@ -25,3 +26,21 @@ Description: detection of transfer RNA genes in genomic sequence stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes. + +Package: trnascan-se-common +Architecture: all +Depends: + ${misc:Depends}, + ${perl:Depends} +Description: detection of transfer RNA genes in genomic sequence (common files) + tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while + giving less than one false positive per 15 gigabases. Two previously described + tRNA detection programs are used as fast, first-pass prefilters to identify + candidate tRNAs, which are then analyzed by a highly selective tRNA covariance + model. This work represents a practical application of RNA covariance models, + which are general, probabilistic secondary structure profiles based on + stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. + Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as + selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes. + . + This package contains the architecture-independent common files. diff --git a/debian/trnascan-se-common.install b/debian/trnascan-se-common.install new file mode 100644 index 0000000..c2e38ab --- /dev/null +++ b/debian/trnascan-se-common.install @@ -0,0 +1,2 @@ +debian/tmp/usr/share/tRNAscan-SE usr/share +debian/tmp/usr/share/perl5 usr/share diff --git a/debian/trnascan-se.install b/debian/trnascan-se.install new file mode 100644 index 0000000..0a69174 --- /dev/null +++ b/debian/trnascan-se.install @@ -0,0 +1,2 @@ +debian/tmp/usr/bin usr +debian/tmp/usr/share/man usr/share -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trnascan-se.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
