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commit 700c4bd173e4ee088185d454c5f31c6d70596cca Author: Emily Ruzich <[email protected]> Date: Fri Apr 1 11:50:16 2011 -0400 fixing manual --- doc/source/manual/AppA.rst | 4 ++-- doc/source/manual/AppReleaseNotes.rst | 4 ++-- doc/source/manual/cookbook.rst | 11 +++++++++-- 3 files changed, 13 insertions(+), 6 deletions(-) diff --git a/doc/source/manual/AppA.rst b/doc/source/manual/AppA.rst index ac4f09b..b730f3d 100755 --- a/doc/source/manual/AppA.rst +++ b/doc/source/manual/AppA.rst @@ -234,8 +234,8 @@ Inspecting the meshes It is advisable to check the validity of the BEM meshes before using them. This can be done with help of tkmedit either -before or after executing mne_setup_forward_model , -see Section 3.7. +before or after executing mne_setup_forward_model, +see :ref:`CIHDBFEG`. Using seglab ############ diff --git a/doc/source/manual/AppReleaseNotes.rst b/doc/source/manual/AppReleaseNotes.rst index f20249f..eb76545 100755 --- a/doc/source/manual/AppReleaseNotes.rst +++ b/doc/source/manual/AppReleaseNotes.rst @@ -654,7 +654,7 @@ mne_opengl_test --------------- New utility for testing the OpenGL graphics performance, -see Section C.2.5. +see :ref:`CIHIIBDA`. mne_volume_data2mri ------------------- @@ -846,7 +846,7 @@ Miscellaneous see :ref:`CBBBBHIF`. - Added --noiserank option to mne_inverse_operator and mne_do_inverse_operator , - see :ref:`CBBDDBGF`and Section 3.13, respectively. + see :ref:`CBBDDBGF`and :ref:`CIHCFJEI`, respectively. - The fif output from mne_convert_dig_data now includes the transformation between the digitizer and MNE head coordinate diff --git a/doc/source/manual/cookbook.rst b/doc/source/manual/cookbook.rst index 5c44d1a..14282a9 100755 --- a/doc/source/manual/cookbook.rst +++ b/doc/source/manual/cookbook.rst @@ -815,10 +815,17 @@ anatomy only, not on the MEG/EEG data to be analyzed. .. note:: The MEG head to MRI transformation matrix specified with the ``--trans`` option should be a text file containing a 4-by-4 matrix: -.. math:: 1 + 1 = 2 +.. math:: T = \[ + \begin{matrix} + R_11 & R_12 & R_13 x_0 \\ + R_13 & R_13 & R_13 y_0 \\ + R_13 & R_13 & R_13 z_0 \\ + 0 & 0 & 0 & 1 \\ + \end{matrix} + \] defined so that if the augmented location vectors in MRI -head and MRI coordinate systems are denoted by INLINE_EQUATION and :math:`r_{head}[x_{MRI}\ y_{MRI}\ z_{MRI}\ 1]`, +head and MRI coordinate systems are denoted by :math:`r_{head}[x_{head}\ y_{head}\ z_{head}\ 1]` and :math:`r_{MRI}[x_{MRI}\ y_{MRI}\ z_{MRI}\ 1]`, respectively, .. math:: r_{MRI} = T r_{head} -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
