This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository python-pysam.
commit f81b19860a3adf730824bbc1357fe66464525fbb Merge: ffc27b1 96af80c Author: Afif Elghraoui <[email protected]> Date: Fri Nov 27 11:52:54 2015 -0800 Merge branch 'master' into debian/jessie-backports Update backport README.rst | 5 +- benchmark/AlignedSegment_bench.py | 43 + debian/changelog | 15 + debian/control | 2 +- debian/patches/adding-include-hts-dirs | 2 +- .../change-htslib-statement-to-link-to-debian | 4 +- debian/patches/correct-spelling-errors.patch | 115 - debian/patches/cython23.patch | 39 - .../patches/disable-tests-requiring-network.patch | 42 + debian/patches/ignore-htslib-dir.patch | 6 +- debian/patches/improve-python3-compatibility.patch | 27 - debian/patches/sam_mpileup.patch | 28 - debian/patches/series | 6 +- debian/patches/strip_online_tests.patch | 82 - debian/python-pysam.lintian-overrides | 2 + debian/python3-pysam.lintian-overrides | 2 + debian/rules | 19 +- debian/tests/control | 4 +- debian/watch | 2 +- doc/api.rst | 15 +- doc/conf.py | 20 +- doc/faq.rst | 26 +- doc/glossary.rst | 34 +- doc/release.rst | 86 + doc/usage.rst | 22 +- pysam/TabProxies.pxd | 94 - pysam/__init__.py | 64 +- pysam/calignedsegment.pxd | 94 + pysam/calignedsegment.pyx | 2277 +++++++ pysam/calignmentfile.pxd | 71 +- pysam/calignmentfile.pyx | 3595 +++-------- pysam/cbcf.pxd | 2 +- pysam/cbcf.pyx | 694 ++- pysam/cfaidx.pxd | 54 +- pysam/cfaidx.pyx | 470 +- pysam/chtslib.pxd | 43 +- pysam/chtslib.pyx | 97 +- pysam/csamfile.pxd | 4 +- pysam/csamfile.pyx | 2 +- pysam/csamtools.pxd | 13 +- pysam/csamtools.pyx | 63 +- pysam/ctabix.pxd | 39 +- pysam/ctabix.pyx | 312 +- pysam/ctabixproxies.pxd | 59 + pysam/{TabProxies.pyx => ctabixproxies.pyx} | 176 +- pysam/cutils.pxd | 27 + pysam/cutils.pyx | 214 + pysam/cvcf.pxd | 40 - pysam/cvcf.pyx | 152 +- pysam/htslib_util.h | 3 - pysam/pysam_util.c | 2 +- pysam/tabix_util.c | 5 +- pysam/version.py | 2 +- requires.txt => requirements.txt | 0 save/pysam_test2.6.py | 2 +- setup.py | 228 +- tests/AlignedSegment_test.py | 236 +- tests/AlignmentFile_test.py | 314 +- tests/SamFile_test.py | 74 +- tests/TestUtils.py | 6 +- tests/faidx_test.py | 99 +- tests/pysam_data/Makefile | 2 +- tests/pysam_data/faidx_ex1.fa | 6540 ++++++++++++++++++++ tests/pysam_data/{ex1.fq => faidx_ex1.fq} | 0 tests/samtools_test.py | 93 +- tests/tabix_test.py | 46 +- 66 files changed, 12616 insertions(+), 4340 deletions(-) diff --cc debian/changelog index 754150a,cb331b8..6b85ed9 --- a/debian/changelog +++ b/debian/changelog @@@ -1,10 -1,18 +1,25 @@@ + python-pysam (0.8.4+ds-1) unstable; urgency=medium + + * Add version constraints to build-dependencies. + * Drop ds suffix versioning. + * Imported Upstream version 0.8.4+ds + * Remove patches applied upstream + * Refresh existing patches + * Refine d/rules + * Set Vcs-Browser to point to cgit rather than gitweb + * Reduce dependencies in autopktest dependencies + * Replace patch for network-dependent tests + * Add new lintian overrides + + -- Afif Elghraoui <[email protected]> Fri, 13 Nov 2015 22:15:14 -0800 + +python-pysam (0.8.3+ds1-3~bpo8+1) jessie-backports; urgency=medium + + * Add version constraints for build-depends. + * Rebuild for jessie-backports. + + -- Afif Elghraoui <[email protected]> Fri, 23 Oct 2015 20:24:03 -0700 + python-pysam (0.8.3+ds1-3) unstable; urgency=medium * Backport upstream commit 6efb22b to permit building with Cython 0.23.x -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-pysam.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
