This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository pbbarcode.
commit 1137a13b25517be6a465867fa3ea5519a99258f2 Author: Afif Elghraoui <[email protected]> Date: Tue Dec 15 00:13:05 2015 -0800 Initial packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 37 +++++++++++++++++++++++++++++++++++++ debian/copyright | 36 ++++++++++++++++++++++++++++++++++++ debian/docs | 1 + debian/rules | 10 ++++++++++ debian/source/format | 1 + debian/tests/control | 3 +++ debian/watch | 3 +++ 9 files changed, 97 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..a71e1a3 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +pbbarcode (0.8.0-1) UNRELEASED; urgency=low + + * Initial release (Closes: #nnnn) + + -- Afif Elghraoui <[email protected]> Sun, 29 Nov 2015 01:37:50 -0800 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..604a24b --- /dev/null +++ b/debian/control @@ -0,0 +1,37 @@ +Source: pbbarcode +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Afif Elghraoui <[email protected]> +Build-Depends: + debhelper (>= 9), + dh-python, + python-setuptools, + python-all-dev, + python-pbcore, + python-numpy (>= 1.6.0), + python-h5py (>= 1.3.0), +# Test-Depends: + python-nose, + python-cram, + python-pbh5tools, +Standards-Version: 3.9.6 +Homepage: https://github.com/PacificBiosciences/pbbarcode +Vcs-Git: git://anonscm.debian.org/debian-med/pbbarcode.git +Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/pbbarcode.git + +Package: pbbarcode +Architecture: any +Depends: + ${misc:Depends}, + ${shlibs:Depends}, + ${python:Depends}, + python-pkg-resources, +Description: annotating PacBio sequencing reads with barcode information + The pbbarcode package provides tools for annotating PacBio sequencing reads + with barcode information. Typically, pbbarcode is called in context of a + SMRTPipe workflow as opposed to directly on the command line, however, users + are encouraged to utilize the command-line utility directly, as more options + are available. + . + This package is part of the SMRTAnalysis suite. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..552dbf1 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,36 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: pbbarcode +Upstream-Contact: Pacific Biosciences <[email protected]> +Source: https://github.com/PacificBiosciences/pbbarcode + +Files: * +Copyright: 2011-2012 Pacific Biosciences of California, Inc. +License: PacBio-BSD-3-Clause + +Files: debian/* +Copyright: 2015 Afif Elghraoui <[email protected]> +License: PacBio-BSD-3-Clause + +License: PacBio-BSD-3-Clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are met: + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + * Neither the name of Pacific Biosciences nor the names of its + contributors may be used to endorse or promote products derived + from this software without specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY PACIFIC BIOSCIENCES AND ITS CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED + TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR + PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS + CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, + EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON + ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..a1320b1 --- /dev/null +++ b/debian/docs @@ -0,0 +1 @@ +README.rst diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..8ebf392 --- /dev/null +++ b/debian/rules @@ -0,0 +1,10 @@ +#!/usr/bin/make -f + +#DH_VERBOSE = 1 + +#include /usr/share/dpkg/default.mk + +PYBUILD_NAME = pbbarcode + +%: + LC_ALL=C.UTF-8 dh $@ --with python2 --buildsystem=pybuild diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..fcf9447 --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Test-Command: make test +Depends: @, make, python-pbh5tools, python-nose, python-cram +Restrictions: allow-stderr, rw-build-tree diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..d775c42 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 + +# No tags to watch upstream -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbbarcode.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
