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bob.dybian-guest pushed a change to branch upstream
in repository plink1.9.
from 14aef78 Imported Upstream version 1.90~b3w-150903
new 597ab21 Imported Upstream version 1.90~b3.28-151216
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile | 2 +-
plink.c | 1020 +++++++++++++++++++---------------
plink_assoc.c | 742 +++----------------------
plink_assoc.h | 10 -
plink_calc.c | 33 +-
plink_cluster.c | 15 +-
plink_cluster.h | 2 +-
plink_common.c | 175 +++---
plink_common.h | 90 +--
plink_data.c | 1654 +++++++++++++++++++++++++++++++++----------------------
plink_data.h | 8 +-
plink_dosage.c | 90 +--
plink_dosage.h | 7 +-
plink_family.c | 1270 +++++++++++++++++++++++++++++++++++++++---
plink_family.h | 2 +-
plink_filter.c | 237 ++++----
plink_filter.h | 24 +-
plink_glm.c | 111 ++--
plink_help.c | 39 +-
plink_lasso.c | 1 +
plink_ld.c | 104 ++--
plink_misc.c | 244 +++++---
plink_misc.h | 1 +
plink_perm.c | 333 +++++++++++
plink_perm.h | 196 +++++++
plink_set.c | 85 ++-
plink_set.h | 4 +-
27 files changed, 4186 insertions(+), 2313 deletions(-)
create mode 100644 plink_perm.c
create mode 100644 plink_perm.h
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