This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository roary.
commit 36d01747b6734abbfcab687693a9fc1126fb982c Author: Sascha Steinbiss <[email protected]> Date: Mon Dec 21 09:37:45 2015 +0000 remove whitespace hunks from patch --- debian/patches/add_abstract.patch | 30 ------------------------------ 1 file changed, 30 deletions(-) diff --git a/debian/patches/add_abstract.patch b/debian/patches/add_abstract.patch index 8744707..0f53d61 100644 --- a/debian/patches/add_abstract.patch +++ b/debian/patches/add_abstract.patch @@ -12,33 +12,3 @@ Applied-Upstream: https://github.com/sanger-pathogens/Roary/pull/220 =head1 SYNOPSIS -@@ -52,7 +52,7 @@ - - sub _build__analyse_groups_obj { - my ( $self ) = @_; -- -+ - return Bio::Roary::AnalyseGroups->new( - fasta_files => $self->fasta_files, - groups_filename => $self->groupfile -@@ -85,9 +85,9 @@ - { - my ( $filename, $directories, $suffix ) = fileparse( $fasta_file, qr/\.[^.]*/ ); - system('grep \> '.$fasta_file.'| sed \'s/>//\' >'.$self->_gene_files_temp_dir_obj."/".$filename.$suffix ) ; -- -+ - my @genes = read_lines($self->_gene_files_temp_dir_obj."/".$filename.$suffix ); -- -+ - for(my $i =0; $i< @genes; $i++) - { - for(my $offset = 1; $offset <= $self->_neighbourhood_size; $offset++) -@@ -111,7 +111,7 @@ - - # iteratively - for my $x ( 0..($self->iterations - 1) ){ -- my ( $in_groups, $out_groups ) = $self->_get_files_for_iteration( $x ); -+ my ( $in_groups, $out_groups ) = $self->_get_files_for_iteration( $x ); - - # read in groups, check paralogs and split - my @newgroups; -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/roary.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
