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commit b97d186b1da4b413a42c58b06d82ae4481e34aec Author: Afif Elghraoui <[email protected]> Date: Sat Jan 2 15:21:55 2016 -0800 Annotate sim4db.install and exclude broken tools. --- debian/sim4db.install | 46 +++++++++++++++++++++++++++++++--------------- 1 file changed, 31 insertions(+), 15 deletions(-) diff --git a/debian/sim4db.install b/debian/sim4db.install index d9b3961..70f7db2 100644 --- a/debian/sim4db.install +++ b/debian/sim4db.install @@ -1,27 +1,43 @@ +# Main executable installdir/bin/sim4db usr/bin -# sim4dbutils + +########################################################### +# sim4dbutils # +# http://kmer.sourceforge.net/wiki/index.php/Sim4db_Files # +########################################################### + +## Most useful +installdir/bin/convertPolishes usr/bin installdir/bin/filterPolishes usr/bin -installdir/bin/headPolishes usr/bin -installdir/bin/mappedCoverage usr/bin installdir/bin/mergePolishes usr/bin installdir/bin/sortPolishes usr/bin +installdir/bin/convertToExtent usr/bin + +## Occasionally Useful +installdir/bin/fixPolishesIID usr/bin +installdir/bin/depthOfPolishes usr/bin +installdir/bin/headPolishes usr/bin installdir/bin/pickBestPolish usr/bin -installdir/bin/pickBestPair usr/bin installdir/bin/pickUniquePolish usr/bin -installdir/bin/cleanPolishes usr/bin -installdir/bin/fixPolishesIID usr/bin installdir/bin/plotCoverageVsIdentity usr/bin -installdir/bin/parseSNP usr/bin +installdir/bin/uniqPolishes usr/bin +installdir/bin/realignPolishes usr/bin +installdir/bin/reportAlignmentDifferences usr/bin + +## Used internally by ESTmapper +installdir/bin/cleanPolishes usr/bin +installdir/bin/summarizePolishes usr/bin + +## Unsupported and Deprecated installdir/bin/comparePolishes usr/bin installdir/bin/convertToAtac usr/bin -installdir/bin/convertToExtent usr/bin -installdir/bin/convertPolishes usr/bin -installdir/bin/depthOfPolishes usr/bin installdir/bin/detectChimera usr/bin -installdir/bin/uniqPolishes usr/bin -installdir/bin/summarizePolishes usr/bin +installdir/bin/mappedCoverage usr/bin +installdir/bin/parseSNP usr/bin installdir/bin/removeDuplicate usr/bin installdir/bin/vennPolishes usr/bin -installdir/bin/realignPolishes usr/bin -installdir/bin/removeRedundant usr/bin -installdir/bin/reportAlignmentDifferences usr/bin +# Marked as broken +#installdir/bin/removeRedundant usr/bin + +## Not mentioned on the wiki, but it gets built +#installdir/bin/pickBestPair usr/bin -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kmer-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
