This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository daligner.
commit e2ca303fb02a43ec6e1ef5ad67b9faf1b5073dc9 Author: Afif Elghraoui <[email protected]> Date: Fri Jan 8 22:46:16 2016 -0800 Refresh/adjust patches --- debian/patches/cflags.patch | 10 +++++++--- debian/patches/destdir-install.patch | 6 +++++- debian/patches/lddflags.patch | 16 +++++++++++++++- 3 files changed, 27 insertions(+), 5 deletions(-) diff --git a/debian/patches/cflags.patch b/debian/patches/cflags.patch index b207fc1..ad6e94f 100644 --- a/debian/patches/cflags.patch +++ b/debian/patches/cflags.patch @@ -1,8 +1,12 @@ +Description: Append to CFLAGS +Author: Afif Elghraoui <[email protected]> +Forwarded: not-needed +Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile @@ -1,4 +1,4 @@ --CFLAGS = -O3 -Wall -Wextra -fno-strict-aliasing -+CFLAGS += -O3 -Wall -Wextra -fno-strict-aliasing +-CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing ++CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing - ALL = daligner HPCdaligner HPCmapper LAsort LAmerge LAsplit LAcat LAshow LAcheck + ALL = daligner HPCdaligner HPCmapper LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex diff --git a/debian/patches/destdir-install.patch b/debian/patches/destdir-install.patch index 4b283f5..5bfb224 100644 --- a/debian/patches/destdir-install.patch +++ b/debian/patches/destdir-install.patch @@ -1,6 +1,10 @@ +Description: Use DESTDIR during installation +Author: Afif Elghraoui <[email protected]> +Forwarded: not-needed +Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile -@@ -41,7 +41,8 @@ +@@ -47,7 +47,8 @@ rm -f daligner.tar.gz install: diff --git a/debian/patches/lddflags.patch b/debian/patches/lddflags.patch index 2fd7038..092704e 100644 --- a/debian/patches/lddflags.patch +++ b/debian/patches/lddflags.patch @@ -1,6 +1,12 @@ +Description: Support LDFLAGS in upstream build system + This patch was made using the following command: + sed -i 's/\(gcc.*\)/\1 \$(LDFLAGS)/' Makefile +Author: Afif Elghraoui <[email protected]> +Forwarded: not-needed +Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile -@@ -5,34 +5,34 @@ +@@ -5,40 +5,40 @@ all: $(ALL) daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h @@ -27,6 +33,10 @@ - gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm + gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS) + LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm ++ gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS) + LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm + gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS) @@ -43,5 +53,9 @@ - gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm + gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm $(LDFLAGS) + LAindex: LAindex.c align.c align.h DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm ++ gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm $(LDFLAGS) + clean: rm -f $(ALL) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/daligner.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
