This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq.
commit 41489bc5a66af085d22aa1a19c466ed06de4408e Author: Michael R. Crusoe <[email protected]> Date: Fri Jan 15 05:53:43 2016 -0800 switch to bowtie2; disable version check --- debian/control | 2 +- debian/copyright | 1 + debian/patches/disable-version-check | 13 +++++++++++++ debian/patches/series | 1 + 4 files changed, 16 insertions(+), 1 deletion(-) diff --git a/debian/control b/debian/control index d47d008..d0043db 100644 --- a/debian/control +++ b/debian/control @@ -27,7 +27,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, ${java:Depends}, - bowtie, + bowtie2, python, libwww-perl, default-jre-headless, diff --git a/debian/copyright b/debian/copyright index ca490ce..3dd4c62 100644 --- a/debian/copyright +++ b/debian/copyright @@ -15,6 +15,7 @@ Files-Excluded: trinity-plugins/jellyfish-*.tar.gz trinity-plugins/htslib*tar* trinity-plugins/samtools* trinity-plugins/slclust/Makefile.bak + galaxy-plugin/GauravGalaxy/analyze_diff_exp.xml~ Files: * Copyright: © 2011 The Broad Institute, Inc diff --git a/debian/patches/disable-version-check b/debian/patches/disable-version-check new file mode 100644 index 0000000..a3b388a --- /dev/null +++ b/debian/patches/disable-version-check @@ -0,0 +1,13 @@ +Author: Michael R. Crusoe <[email protected]> +Description: Disable the version "phone home" for privacy +--- trinityrnaseq.orig/Trinity ++++ trinityrnaseq/Trinity +@@ -552,7 +552,7 @@ + + my $ANANAS_DIR = ""; + +-my $NO_VERSION_CHECK = 0; ++my $NO_VERSION_CHECK = 1; + + + &GetOptions( diff --git a/debian/patches/series b/debian/patches/series index 68d9373..ab49bc3 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -11,3 +11,4 @@ fix_system_paths hardening reproducible-build scaffold_iworm_contigs-Makefile-fix-clean +disable-version-check -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
