This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq.
commit 77de52d9e7b24fadb5d5de86eb2565fc573e0134 Author: Michael R. Crusoe <[email protected]> Date: Fri Jan 15 06:31:57 2016 -0800 adjust path to trimmomatic adapters --- debian/patches/adjust-trimmomatic-adapters-path | 13 +++++++++++++ debian/patches/series | 1 + 2 files changed, 14 insertions(+) diff --git a/debian/patches/adjust-trimmomatic-adapters-path b/debian/patches/adjust-trimmomatic-adapters-path new file mode 100644 index 0000000..bdd4a53 --- /dev/null +++ b/debian/patches/adjust-trimmomatic-adapters-path @@ -0,0 +1,13 @@ +Author: Michael R. Crusoe +Description: Match the Debian's path +--- trinityrnaseq.orig/Trinity ++++ trinityrnaseq/Trinity +@@ -193,7 +193,7 @@ + + ## Quality trimming params + my $RUN_TRIMMOMATIC_FLAG = 0; +-my $trimmomatic_quality_trim_params = "ILLUMINACLIP:$TRIMMOMATIC_DIR/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25"; ++my $trimmomatic_quality_trim_params = "ILLUMINACLIP:$TRIMMOMATIC_DIR/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25"; + + ## Normalize reads + my $NORMALIZE_READS_FLAG = 0; diff --git a/debian/patches/series b/debian/patches/series index dcd2222..bb78d37 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -13,3 +13,4 @@ hardening reproducible-build scaffold_iworm_contigs-Makefile-fix-clean disable-version-check +adjust-trimmomatic-adapters-path -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
