This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository trinityrnaseq.
commit a1941bc6953eda5af0a2128bcdd73bf0c5b57245 Author: Michael R. Crusoe <[email protected]> Date: Fri Jan 15 14:24:51 2016 -0800 add bowtie dependency & update trimmomatic path --- debian/control | 1 + debian/patches/adjust-trimmomatic-adapters-path | 9 +++++++++ 2 files changed, 10 insertions(+) diff --git a/debian/control b/debian/control index 5d5f354..4d2ab61 100644 --- a/debian/control +++ b/debian/control @@ -27,6 +27,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, ${java:Depends}, + bowtie, bowtie2, python, libwww-perl, diff --git a/debian/patches/adjust-trimmomatic-adapters-path b/debian/patches/adjust-trimmomatic-adapters-path index bdd4a53..e787ec8 100644 --- a/debian/patches/adjust-trimmomatic-adapters-path +++ b/debian/patches/adjust-trimmomatic-adapters-path @@ -2,6 +2,15 @@ Author: Michael R. Crusoe Description: Match the Debian's path --- trinityrnaseq.orig/Trinity +++ trinityrnaseq/Trinity +@@ -45,7 +45,7 @@ + my $COLLECTL_DIR = "/usr/bin"; + my $PARAFLY = "/usr/bin/ParaFly"; + my $TRIMMOMATIC = "/usr/share/java/trimmomatic.jar"; +-my $TRIMMOMATIC_DIR = "$ROOTDIR/trinity-plugins/Trimmomatic"; ++my $TRIMMOMATIC_DIR = "/usr/share/Trimmomatic"; + + $ENV{PATH} = "$ROOTDIR/trinity-plugins/BIN:$ENV{PATH}"; + @@ -193,7 +193,7 @@ ## Quality trimming params -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/trinityrnaseq.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
