This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch debian/jessie-backports in repository kmer-tools.
commit 55c547ef069201fd3fde5edeb5c8c823ced9d860 Merge: 87104aa 05de1bf Author: Afif Elghraoui <[email protected]> Date: Fri Jan 15 21:06:53 2016 -0800 Merge tag 'debian/0_20150903+r2013-1' into debian/jessie-backports Conflicts: debian/changelog PACKAGING | 104 + configure.sh | 6 +- debian/README.Debian | 10 + debian/README.source | 24 +- debian/changelog | 23 + debian/control | 59 +- debian/copyright | 101 +- debian/docs | 3 - debian/get-orig-source | 32 +- debian/leaff.docs | 1 + debian/leaff.install | 1 + debian/leaff.manpages | 1 + debian/man/leaff/leaff.1 | 159 + debian/{ => man/meryl}/existDB.1 | 21 +- debian/{ => man/meryl}/kmer-mask.1 | 0 debian/{ => man/meryl}/mapMers-depth.1 | 0 debian/{ => man/meryl}/mapMers.1 | 0 debian/{ => man/meryl}/meryl.1 | 0 debian/{ => man/meryl}/positionDB.1 | 0 debian/{ => man/meryl}/simple.1 | 0 debian/man/sim4db/cleanPolishes.1 | 1 + debian/man/sim4db/comparePolishes.1 | 1 + debian/man/sim4db/convertPolishes.1 | 1 + debian/man/sim4db/convertToAtac.1 | 1 + debian/man/sim4db/convertToExtent.1 | 1 + debian/man/sim4db/depthOfPolishes.1 | 1 + debian/man/sim4db/detectChimera.1 | 1 + debian/man/sim4db/filterPolishes.1 | 1 + debian/man/sim4db/fixPolishesIID.1 | 1 + debian/man/sim4db/headPolishes.1 | 1 + debian/man/sim4db/mappedCoverage.1 | 1 + debian/man/sim4db/mergePolishes.1 | 1 + debian/man/sim4db/parseSNP.1 | 1 + debian/man/sim4db/pickBestPolish.1 | 1 + debian/man/sim4db/pickUniquePolish.1 | 1 + debian/man/sim4db/plotCoverageVsIdentity.1 | 1 + debian/man/sim4db/realignPolishes.1 | 1 + debian/man/sim4db/removeDuplicate.1 | 1 + debian/man/sim4db/reportAlignmentDifferences.1 | 1 + debian/man/sim4db/sim4db.1 | 123 + debian/man/sim4db/sim4dbutils.1 | 60 + debian/man/sim4db/sortPolishes.1 | 1 + debian/man/sim4db/summarizePolishes.1 | 1 + debian/man/sim4db/uniqPolishes.1 | 1 + debian/man/sim4db/vennPolishes.1 | 1 + debian/meryl.manpages | 8 +- debian/patches/allow-freebsd-build.patch | 121 + debian/patches/kazlib.patch | 41 - debian/patches/remove-kazlib.patch | 39 - debian/patches/series | 3 +- debian/rules | 19 +- debian/sim4db.docs | 1 + debian/sim4db.install | 43 + debian/sim4db.manpages | 1 + debian/upstream/metadata | 4 +- libutil/kazlib/Make.include | 27 + libutil/kazlib/blast.pl | 33 + libutil/kazlib/dict.c | 1238 +++++++ libutil/kazlib/dict.h | 142 + libutil/kazlib/docs/CHANGES | 290 ++ libutil/kazlib/docs/MUST_READ | 25 + libutil/kazlib/docs/README | 66 + libutil/kazlib/docs/docs.ist | 4 + libutil/kazlib/docs/docs.ltx | 4155 ++++++++++++++++++++++++ libutil/kazlib/drivers/dict-main.c | 300 ++ libutil/kazlib/drivers/except-main.c | 57 + libutil/kazlib/drivers/hash-main.c | 187 ++ libutil/kazlib/drivers/list-main.c | 152 + libutil/kazlib/drivers/sfx-main.c | 41 + libutil/kazlib/except.c | 347 ++ libutil/kazlib/except.h | 147 + libutil/kazlib/hash.c | 837 +++++ libutil/kazlib/hash.h | 238 ++ libutil/kazlib/list.c | 766 +++++ libutil/kazlib/list.h | 152 + libutil/kazlib/sfx.c | 1138 +++++++ libutil/kazlib/sfx.h | 46 + meryl/args.C | 2 +- meryl/build.C | 70 +- meryl/estimate.C | 136 +- meryl/kmer-mask.C | 344 +- meryl/mapMers.C | 26 +- meryl/meryl.H | 7 +- sim4dbutils/reportAlignmentDifferences.C | 2 +- 84 files changed, 11585 insertions(+), 421 deletions(-) diff --cc debian/changelog index 1c81c24,60ed7ba..21cbbbd --- a/debian/changelog +++ b/debian/changelog @@@ -1,9 -1,26 +1,32 @@@ + kmer-tools (0~20150903+r2013-1) unstable; urgency=low + + * Simplify get-orig-source script + * Imported Upstream version 0~20150903+r2013 + * Clean up source package: move meryl manpages to a subdirectory of debian/ + * New binary packages: + - leaff + - sim4db + * Drop build-dependency on libbz2-dev + * Drop kazlib quilt patches + * Fix section/architecture of the kmer metapackage + * Set Vcs-Browser to point to cgit + * Don't install other READMEs to metapackage docs + * Update d/copyright + * Update README.source + - document situation with bundled kazlib + - document reason for monolithic source package + * Make the build system more flexible to hopefully fix build on kFreeBSD + * Add README.Debian to let users know some components aren't yet packaged + * Add comment for why we can't use dh --parallel + + -- Afif Elghraoui <[email protected]> Sat, 02 Jan 2016 16:49:00 -0800 + +kmer-tools (0~20150520+2004-1~bpo8+1) jessie-backports; urgency=medium + + * Rebuild for jessie-backports. + + -- Afif Elghraoui <[email protected]> Sun, 20 Sep 2015 01:41:57 -0700 + kmer-tools (0~20150520+2004-1) unstable; urgency=low * Initial release (Closes: #784863) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/kmer-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
