Author: sascha-guest Date: 2016-02-06 14:08:46 +0000 (Sat, 06 Feb 2016) New Revision: 21381
Added: trunk/packages/genometools/trunk/debian/README.status Removed: trunk/packages/genometools/trunk/debian/README.status trunk/packages/genometools/trunk/debian/changelog trunk/packages/genometools/trunk/debian/compat trunk/packages/genometools/trunk/debian/control trunk/packages/genometools/trunk/debian/copyright trunk/packages/genometools/trunk/debian/genometools-common.install trunk/packages/genometools/trunk/debian/genometools-doc.doc-base trunk/packages/genometools/trunk/debian/genometools-doc.docs trunk/packages/genometools/trunk/debian/genometools.docs trunk/packages/genometools/trunk/debian/genometools.install trunk/packages/genometools/trunk/debian/genometools.manpages trunk/packages/genometools/trunk/debian/libgenometools0-dev.install trunk/packages/genometools/trunk/debian/libgenometools0-dev.links trunk/packages/genometools/trunk/debian/libgenometools0.install trunk/packages/genometools/trunk/debian/libgenometools0.postinst trunk/packages/genometools/trunk/debian/libgenometools0.postrm trunk/packages/genometools/trunk/debian/patches/ trunk/packages/genometools/trunk/debian/rules trunk/packages/genometools/trunk/debian/source/ trunk/packages/genometools/trunk/debian/strip-nondeterminism/ trunk/packages/genometools/trunk/debian/tests/ trunk/packages/genometools/trunk/debian/upstream/ trunk/packages/genometools/trunk/debian/watch Log: clean up svn repo Deleted: trunk/packages/genometools/trunk/debian/README.status =================================================================== --- trunk/packages/genometools/trunk/debian/README.status 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/README.status 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -This package has been migrated to Git: https://anonscm.debian.org/git/debian-med/genometools.git Added: trunk/packages/genometools/trunk/debian/README.status =================================================================== --- trunk/packages/genometools/trunk/debian/README.status (rev 0) +++ trunk/packages/genometools/trunk/debian/README.status 2016-02-06 14:08:46 UTC (rev 21381) @@ -0,0 +1 @@ +This package has been migrated to Git: https://anonscm.debian.org/git/debian-med/genometools.git Deleted: trunk/packages/genometools/trunk/debian/changelog =================================================================== --- trunk/packages/genometools/trunk/debian/changelog 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/changelog 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,233 +0,0 @@ -genometools (1.5.8-1) unstable; urgency=medium - - * New upstream release. - * Ensure that /usr/share/genometools/* is complete. - * Fix spelling. - - -- Sascha Steinbiss <[email protected]> Thu, 07 Jan 2016 22:18:31 +0000 - -genometools (1.5.7-7) unstable; urgency=medium - - * build API documentation reproducibly - - -- Sascha Steinbiss <[email protected]> Sat, 12 Dec 2015 19:13:40 +0000 - -genometools (1.5.7-6) unstable; urgency=medium - - * Reintroduce mips64el which was removed my mistake. - * Fix detection of x32 build - - -- Sascha Steinbiss <[email protected]> Wed, 09 Dec 2015 22:20:47 +0000 - -genometools (1.5.7-5) unstable; urgency=medium - - * Try to load correct renamed .so file in Python bindings - * Refresh patches - * Use DEB_TARGET_ARCH to determine build archs - - -- Sascha Steinbiss <[email protected]> Tue, 08 Dec 2015 00:42:49 +0000 - -genometools (1.5.7-4) unstable; urgency=medium - - * Fix builds on less popular platforms - - Check if faketime works - - Do no use -m32/-m64 on x32 - * Improve reproducibility - - sort files to compile by name - * Add autopkgtests - - -- Sascha Steinbiss <[email protected]> Fri, 04 Dec 2015 22:18:11 +0000 - -genometools (1.5.7-3) unstable; urgency=low - - * d/control: remove obsolete dependency on libncurses5 - Closes: #804576 - - -- Sascha Steinbiss <[email protected]> Mon, 09 Nov 2015 19:15:29 +0000 - -genometools (1.5.7-2) unstable; urgency=low - - * disable parallel building - - -- Sascha Steinbiss <[email protected]> Sat, 10 Oct 2015 12:04:37 +0000 - -genometools (1.5.7-1) unstable; urgency=low - - * New upstream release. - * d/rules: try ro improve reproducibility - - -- Sascha Steinbiss <[email protected]> Sun, 13 Sep 2015 08:22:39 +0000 - -genometools (1.5.6-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Mon, 22 Jun 2015 19:26:35 +0000 - -genometools (1.5.5-2) unstable; urgency=low - - * Disable faketime on hurd-i386 to fix FTBFS on that arch. - - -- Sascha Steinbiss <[email protected]> Wed, 10 Jun 2015 10:03:22 +0000 - -genometools (1.5.5-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Sat, 06 Jun 2015 09:49:49 +0000 - -genometools (1.5.4-2) experimental; urgency=low - - * Work towards reproducibility. - - -- Sascha Steinbiss <[email protected]> Sun, 22 Mar 2015 08:09:07 +0000 - -genometools (1.5.4-1) experimental; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Fri, 12 Dec 2014 12:06:42 +0000 - -genometools (1.5.3-2) unstable; urgency=low - - * Reactivate missing patch. - - -- Sascha Steinbiss <[email protected]> Fri, 05 Sep 2014 14:23:31 +0100 - -genometools (1.5.3-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Wed, 16 Jul 2014 20:32:19 +0100 - -genometools (1.5.2-4) unstable; urgency=low - - * Incorporate patches addressing type conversion errors (thanks to - Michael Tautschnig). - Closes: #748305 - - -- Sascha Steinbiss <[email protected]> Sat, 24 May 2014 18:57:45 +0000 - -genometools (1.5.2-3) unstable; urgency=low - - * Address building issues on s390x, powerpc and armhf - * Don't use -m64 for arm64 (thanks to Logan Rosen) - Closes: #748708 - * Build-depend on docbook-xsl to fix FTBFS while offline (thanks to - Logan Rosen) - Closes: #748709 - - -- Sascha Steinbiss <[email protected]> Mon, 19 May 2014 23:06:34 +0000 - -genometools (1.5.2-2) unstable; urgency=low - - * Split manuals into separate documents to avoid strange LaTeX build issues. - - -- Sascha Steinbiss <[email protected]> Thu, 15 May 2014 23:23:20 +0000 - -genometools (1.5.2-1) unstable; urgency=low - - * New upstream release. - * Remove symbols file because private symbols are exported (next upstream - version will properly control exported symbols and a new symbols file - will be created and maintained) - * Remove manpages from debian directory as they are now autogenerated on - build - * Fix some missing symbols problems - - -- Sascha Steinbiss <[email protected]> Thu, 15 May 2014 10:51:41 +0000 - -genometools (1.5.1-3) unstable; urgency=low - - * debian/rules - - Add basic tests to check whether cairo/pango linking works - - Clean up indices created by tests to make repeated builds possible - - Make sure bin/examples/sketch_parsed_with_* are built - - Enable compiler optimization - * debian/control - - Move libgenometools0 package into libs section - - Switch pango deps to new package - - Add ruby builddep, required for the testsuite - - -- Sascha Steinbiss <[email protected]> Wed, 06 Nov 2013 14:28:41 +0100 - -genometools (1.5.1-2) unstable; urgency=low - - * debian/control - - Add myself to Uploaders - - cme fix dpkg-control - - Follow liblua package name transition - Closes: #728017 - - Remove depends from virtual package python-ctypes which is provided - by python - * provide symbols file - - -- Andreas Tille <[email protected]> Mon, 28 Oct 2013 08:17:04 +0100 - -genometools (1.5.1-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Thu, 07 Mar 2013 14:08:05 +0100 - -genometools (1.5.0-2) unstable; urgency=low - - * Patch manuals not to use includecomment/excludecomment - - -- Sascha Steinbiss <[email protected]> Sat, 16 Feb 2013 16:58:11 +0100 - -genometools (1.5.0-1) unstable; urgency=low - - * New upstream release - * bugfixes and cleanups - * development tool `gt sain' added to run an induced suffix array sorting - algorithm - * the -typecheck option in the `gt gff3` and `gt gff3validator` tools - now also validates parent (part-of) relationships, see -help output for - details - * new option -encseq besides -seqfile(s) and -regionmapping to select a - encseq index as a sequence source - * GtBioseq backend switched to GtEncseq - * GtSeqCol is now an interface, GtEncseqCol added - * GtRankedList added - * GtSNPAnnotatorStream and `gt snpper' tool added - * node sorting code is now aware of MD5 hash presence - * compatibility with old Pango versions inproved - - -- Sascha Steinbiss <[email protected]> Tue, 05 Feb 2013 18:52:22 +0100 - -genometools (1.4.2-4) unstable; urgency=low - - * Remove shlibs.local file - - -- Sascha Steinbiss <[email protected]> Tue, 09 Oct 2012 12:24:17 +0200 - -genometools (1.4.2-3) unstable; urgency=low - - * Build with pbuilder to obtain reasonable libc dependency (>= 2.13) - - -- Sascha Steinbiss <[email protected]> Tue, 09 Oct 2012 10:04:34 +0200 - -genometools (1.4.2-2) unstable; urgency=low - - * Fixed libpango-dev dependency - * Updated manpages - - -- Sascha Steinbiss <[email protected]> Mon, 08 Oct 2012 07:51:52 +0200 - -genometools (1.4.2-1) unstable; urgency=low - - * New upstream release - [ Sponsor Steffen Moeller ] - * Update of policy to 3.9.4 - * Added DMUA flag - - -- Sascha Steinbiss <[email protected]> Fri, 05 Oct 2012 15:47:56 +0200 - -genometools (1.4.1-1) unstable; urgency=low - - * Initial release (Closes: #657923) - * the GFF3 parser now handles children which are defined before their parents - * many small improvements to the GFF3 parser - - -- Sascha Steinbiss <[email protected]> Mon, 09 Jul 2012 14:10:23 +0100 Deleted: trunk/packages/genometools/trunk/debian/compat =================================================================== --- trunk/packages/genometools/trunk/debian/compat 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/compat 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -9 Deleted: trunk/packages/genometools/trunk/debian/control =================================================================== --- trunk/packages/genometools/trunk/debian/control 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/control 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,134 +0,0 @@ -Source: genometools -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Sascha Steinbiss <[email protected]>, - Andreas Tille <[email protected]> -Section: science -Priority: optional -Build-Depends: debhelper (>= 9), - liblua5.1-0-dev, - lua-md5-dev, - lua-filesystem-dev, - lua-lpeg-dev, - libcairo2-dev, - zlib1g-dev, - libbz2-dev, - libexpat1-dev, - libsqlite3-dev, - libbam-dev, - libpango1.0-dev, - libtre-dev, - texlive-latex-base, - texlive-latex-extra, - texlive-fonts-extra, - latex-xcolor, - texlive-fonts-recommended, - python, - asciidoc, - libxml2-utils, - xsltproc, - ruby, - docbook-xsl, - faketime, - imagemagick -Standards-Version: 3.9.6 -Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/genometools/trunk/ -Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/genometools/trunk/ -Homepage: http://genometools.org - -Package: genometools -Architecture: amd64 arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x alpha hppa hurd-i386 kfreebsd-amd64 m68k mips64el kfreebsd-i386 ppc64 sh4 x32 -Depends: ${shlibs:Depends}, - ${misc:Depends}, - genometools-common -Description: versatile genome analysis toolkit - The GenomeTools contains a collection of useful tools for biological - sequence analysis and -presentation combined into a single binary. - . - The toolkit contains binaries for sequence and annotation handling, sequence - compression, index structure generation and access, annotation visualization, - and much more. - -Package: genometools-common -Architecture: all -Depends: ${misc:Depends}, - liblua5.1-0, - libcairo2, - zlib1g, - libbz2-1.0, - libexpat1, - libpth20, - libsqlite3-0, - libpango-1.0-0, - libpangocairo-1.0-0, - libtre5 -Description: shared data files for GenomeTools - This package contains configuration files such as alphabet - transformations, style files, etc. required to use the GenomeTools - executable and/or library. - -Package: libgenometools0 -Architecture: amd64 arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x alpha hppa hurd-i386 kfreebsd-amd64 m68k mips64el kfreebsd-i386 ppc64 sh4 x32 -Section: libs -Depends: ${shlibs:Depends}, - ${misc:Depends}, - genometools-common -Description: versatile genome analysis library - This package contains the GenomeTools shared library and header - files. It offers efficient sequence analysis components, available - via an object-oriented interface. - . - Besides basic bioinformatics data structures, the library contains components - for sequence and annotation handling, sequence compression, index structure - generation and access, efficient matching, annotation visualization and much - more. - -Package: libgenometools0-dev -Architecture: amd64 arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x alpha hppa hurd-i386 kfreebsd-amd64 m68k mips64el kfreebsd-i386 ppc64 sh4 x32 -Section: libdevel -Depends: ${shlibs:Depends}, - ${misc:Depends}, - libgenometools0 (= ${binary:Version}) -Description: development files for GenomeTools - This package contains the GenomeTools static library and necessary - header files. - . - Besides basic bioinformatics data structures, the library contains components - for sequence and annotation handling, sequence compression, index structure - generation and access, efficient matching, annotation visualization and much - more. - -Package: genometools-doc -Architecture: all -Section: doc -Depends: ${misc:Depends} -Description: documentation for GenomeTools - This package contains API documentation and tool documentation for - GenomeTools. The GenomeTools toolkit contains binaries for sequence and - annotation handling, sequence compression, index structure generation and - access, annotation visualization, and much more. - -Package: genometools-dbg -Architecture: amd64 arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x alpha hppa hurd-i386 kfreebsd-amd64 m68k mips64el kfreebsd-i386 ppc64 sh4 x32 -Section: debug -Priority: extra -Depends: ${shlibs:Depends}, - ${misc:Depends}, - genometools (= ${binary:Version}) | libgenometools0 (= ${binary:Version}) -Description: versatile genome analysis toolkit, with debug symbols - This package contains debug information stripped from the GenomeTools. - You may decide to install it to help identifying issues, typically - to help communication with upstream developers. - -Package: python-genometools -Architecture: all -Section: python -Depends: ${shlibs:Depends}, - ${misc:Depends}, - ${python:Depends}, - python-ctypes, - libgenometools0 -Description: Python bindings for genometools - Partial Python2 bindings for the GenomeTools library. Besides basic - bioinformatics data structures, the library contains components for sequence - and annotation handling, sequence compression, index structure generation and - access, efficient matching, annotation visualization and much more. Deleted: trunk/packages/genometools/trunk/debian/copyright =================================================================== --- trunk/packages/genometools/trunk/debian/copyright 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/copyright 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,112 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: genometools -Source: http://genometools.org - -Files: - * -Copyright: - 2001-2014 Stefan Kurtz - 2003-2014 Gordon Gremme - 2007-2014 Sascha Steinbiss - 2004-2012 Stefan Bienert - 2010-2011 Joachim Bonnet - 2007 David Ellinghaus - 2008 Johannes Fischer - 2009-2014 Giorgio Gonnella - 2007-2008 Thomas Jahns - 2007 Malte Mader - 2009 Brent Pedersen - 2007 Christin Schaerfer - 2007 David Schmitz-Huebsch - 2003-2005 Michael E Sparks - 2009 Zhihao Tang - 2010-2014 Dirk Willrodt - 2004-2014 Center for Bioinformatics, University of Hamburg - 2014 Genome Research Ltd -License: ISC - Permission to use, copy, modify, and distribute this software for any - purpose with or without fee is hereby granted, provided that the above - copyright notice and this permission notice appear in all copies. - . - THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES - WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF - MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR - ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES - WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN - ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF - OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. - -Files: - src/core/yarandom.* -Copyright: - 1997,1998,2003 Jamie Zawinski -License: yarandom - Permission to use, copy, modify, distribute, and sell this software and its - documentation for any purpose is hereby granted without fee, provided that - the above copyright notice appear in all copies and that both that - copyright notice and this permission notice appear in supporting - documentation. No representations are made about the suitability of this - software for any purpose. It is provided "as is" without express or - implied warranty. - -Files: - src/core/msort.* -Copyright: - 1992, 1993 The Regents of the University of California - This code is derived from software contributed - to Berkeley by Peter McIlroy. -License: BSD-3-clause - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - 3. Neither the name of the University nor the names of its contributors - may be used to endorse or promote products derived from this software - without specific prior written permission. - . - THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND - ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE - IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE - FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS - OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) - HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY - OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF - SUCH DAMAGE. - -Files: - src/extended/rbtree.* -Copyright: - Copyright (c) 2009 Charles Wilson -License: Expat - Derived from code released into the public domain by Julienne Walker: - http://eternallyconfuzzled.com/tuts/datastructures/jsw_tut_rbtree.aspx - > Created (Julienne Walker): August 23, 2003 - > Modified (Julienne Walker): March 14, 2008 - . - Permission is hereby granted, free of charge, to any person - obtaining a copy of this software and associated documentation - files (the "Software"), to deal in the Software without - restriction, including without limitation the rights to use, - copy, modify, merge, publish, distribute, sublicense, and/or sell - copies of the Software, and to permit persons to whom the - Software is furnished to do so, subject to the following - conditions: - . - The above copyright notice and this permission notice shall be - included in all copies or substantial portions of the Software. - . - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, - EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES - OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND - NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT - HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, - WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING - FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR - OTHER DEALINGS IN THE SOFTWARE. Deleted: trunk/packages/genometools/trunk/debian/genometools-common.install =================================================================== --- trunk/packages/genometools/trunk/debian/genometools-common.install 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools-common.install 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,18 +0,0 @@ -usr/bin/gtdata/doc usr/share/genometools/gtdata -usr/bin/gtdata/obo_files usr/share/genometools/gtdata -usr/bin/gtdata/sketch usr/share/genometools/gtdata -usr/bin/gtdata/spec usr/share/genometools/gtdata -usr/bin/gtdata/trans usr/share/genometools/gtdata -usr/bin/gtdata/xrf_abbr usr/share/genometools/gtdata -usr/bin/gtdata/modules/fileutils.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtdoclib.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtdoclib usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/warning.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/external/md5.lua usr/share/genometools/gtdata/modules/external -usr/bin/gtdata/modules/external/re.lua usr/share/genometools/gtdata/modules/external - Deleted: trunk/packages/genometools/trunk/debian/genometools-doc.doc-base =================================================================== --- trunk/packages/genometools/trunk/debian/genometools-doc.doc-base 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools-doc.doc-base 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,14 +0,0 @@ -Document: genometools-doc -Title: GenomeTools manuals -Author: GenomeTools Team -Abstract: User manuals for GenomeTools - The GenomeTools contains a collection of useful tools for biological - sequence analysis and -presentation combined into a single binary. - . - The toolkit contains binaries for sequence and annotation handling, sequence - compression, index structure generation and access, annotation visualization, - and much more. -Section: Science/Biology - -Format: PDF -Files: /usr/share/doc/genometools-doc/*.pdf.gz Deleted: trunk/packages/genometools/trunk/debian/genometools-doc.docs =================================================================== --- trunk/packages/genometools/trunk/debian/genometools-doc.docs 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools-doc.docs 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,2 +0,0 @@ -doc/manuals/*.pdf -doc/devguide/devguide.pdf Deleted: trunk/packages/genometools/trunk/debian/genometools.docs =================================================================== --- trunk/packages/genometools/trunk/debian/genometools.docs 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools.docs 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,3 +0,0 @@ -README -CONTRIBUTORS -VERSION Deleted: trunk/packages/genometools/trunk/debian/genometools.install =================================================================== --- trunk/packages/genometools/trunk/debian/genometools.install 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools.install 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,3 +0,0 @@ -usr/bin/gt -usr/bin/gt - Deleted: trunk/packages/genometools/trunk/debian/genometools.manpages =================================================================== --- trunk/packages/genometools/trunk/debian/genometools.manpages 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/genometools.manpages 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -debian/tmp/usr/share/man/man1/* Deleted: trunk/packages/genometools/trunk/debian/libgenometools0-dev.install =================================================================== --- trunk/packages/genometools/trunk/debian/libgenometools0-dev.install 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/libgenometools0-dev.install 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -usr/include Deleted: trunk/packages/genometools/trunk/debian/libgenometools0-dev.links =================================================================== --- trunk/packages/genometools/trunk/debian/libgenometools0-dev.links 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/libgenometools0-dev.links 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -usr/lib/libgenometools.so.0 usr/lib/libgenometools.so Deleted: trunk/packages/genometools/trunk/debian/libgenometools0.install =================================================================== --- trunk/packages/genometools/trunk/debian/libgenometools0.install 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/libgenometools0.install 2016-02-06 14:08:46 UTC (rev 21381) @@ -1 +0,0 @@ -lib/libgenometools.so.0 usr/lib Deleted: trunk/packages/genometools/trunk/debian/libgenometools0.postinst =================================================================== --- trunk/packages/genometools/trunk/debian/libgenometools0.postinst 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/libgenometools0.postinst 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,37 +0,0 @@ -#!/bin/sh -# postinst script for #PACKAGE# -# -# see: dh_installdeb(1) - -set -e - -# summary of how this script can be called: -# * <postinst> `configure' <most-recently-configured-version> -# * <old-postinst> `abort-upgrade' <new version> -# * <conflictor's-postinst> `abort-remove' `in-favour' <package> -# <new-version> -# * <postinst> `abort-remove' -# * <deconfigured's-postinst> `abort-deconfigure' `in-favour' -# <failed-install-package> <version> `removing' -# <conflicting-package> <version> -# for details, see http://www.debian.org/doc/debian-policy/ or -# the debian-policy package - - -case "$1" in - configure) - ldconfig - ;; - - abort-upgrade|abort-remove|abort-deconfigure) - ;; - - *) - echo "postinst called with unknown argument \`$1'" >&2 - exit 1 - ;; -esac - -#DEBHELPER# - -exit 0 Deleted: trunk/packages/genometools/trunk/debian/libgenometools0.postrm =================================================================== --- trunk/packages/genometools/trunk/debian/libgenometools0.postrm 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/libgenometools0.postrm 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,38 +0,0 @@ -#!/bin/sh -# postrm script for #PACKAGE# -# -# see: dh_installdeb(1) - -set -e - -# summary of how this script can be called: -# * <postrm> `remove' -# * <postrm> `purge' -# * <old-postrm> `upgrade' <new-version> -# * <new-postrm> `failed-upgrade' <old-version> -# * <new-postrm> `abort-install' -# * <new-postrm> `abort-install' <old-version> -# * <new-postrm> `abort-upgrade' <old-version> -# * <disappearer's-postrm> `disappear' <overwriter> -# <overwriter-version> -# for details, see http://www.debian.org/doc/debian-policy/ or -# the debian-policy package - - -case "$1" in - purge|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear) - ;; - - remove) - ldconfig - ;; - - *) - echo "postrm called with unknown argument \`$1'" >&2 - exit 1 - ;; -esac - -#DEBHELPER# - -exit 0 Deleted: trunk/packages/genometools/trunk/debian/rules =================================================================== --- trunk/packages/genometools/trunk/debian/rules 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/rules 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,68 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- - -#export DH_VERBOSE=1 -export DESTDIR=$(CURDIR)/debian/tmp -export DH_ALWAYS_EXCLUDE=.gitignore -export PATH := $(CURDIR)/debian/strip-nondeterminism:$(PATH) -export SOURCE_DATE_EPOCH = $(shell date -d "$$(dpkg-parsechangelog -SDate)" +%s) - -DARCH:=$(shell dpkg-architecture | fgrep DEB_TARGET_ARCH= | cut -f 2 -d'=') -BITS:=$(shell dpkg-architecture | fgrep DEB_TARGET_ARCH_BITS= | cut -f 2 -d'=') - -ifeq ($(DARCH),x32) - X32:=yes -else - X32:=no -endif - -ifeq ($(BITS),64) - 64BIT:=yes -else - 64BIT:=no -endif - -# check whether faketime can be used -ifeq ($(shell faketime 'last friday' date > /dev/null 2> /dev/null; echo $$?),0) - FAKETIME:=faketime -f "`TZ=UTC date -d @$(SOURCE_DATE_EPOCH) +'%Y-%m-%d %H:%M:%S'`" -endif - -%: - dh $@ --with python2 - -override_dh_auto_clean: - $(MAKE) cleanup - cd doc/manuals; $(MAKE) cleanup - # should be deleted inside doc/manuals/Makefile - rm -f doc/manuals/annotationsketch.out \ - doc/manuals/api_reference.tex \ - doc/manuals/gtscript_reference.tex - find doc . -name "*.toc" -delete - find testdata \( -name '*.ois' -or -name '*.sds' -or -name '*.esq' -or \ - -name '*.ssp' -or -name '*.des' -or -name "*.md5" \) -and \( -not \ - -name '*foo.32.*' -not -name '*foo.64.*' \) -delete - rm -f www/genometools.org/htdocs/images/callbacks.png \ - www/genometools.org/htdocs/images/parsed.png \ - www/genometools.org/htdocs/images/constructed.png \ - doc/manuals/annotationsketch.pdf - rm -f www/genometools.org/htdocs/docs.html \ - www/genometools.org/htdocs/examples.html \ - www/genometools.org/htdocs/libgenometools.html \ - www/genometools.org/htdocs/tools/gt.html - rm -rf gtpython/build - -override_dh_auto_build: - $(FAKETIME) dh_auto_build -- useshared=yes x32=$(X32) 64bit=$(64BIT) errorcheck=no all docs manuals - -override_dh_auto_test: - bin/gt -test - cd testsuite; ./testsuite.rb -keywords 'gt_sketch and not gt_python and not gt_ruby' -threads 3 - -override_dh_auto_install: - dh_auto_install -- installmanpages useshared=yes \ - x32=$(X32) 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr - dh_auto_install --sourcedirectory=gtpython \ - --destdir=$(CURDIR)/debian/python-genometools - -override_dh_strip: - dh_strip --dbg-package=genometools-dbg Deleted: trunk/packages/genometools/trunk/debian/watch =================================================================== --- trunk/packages/genometools/trunk/debian/watch 2016-02-06 13:58:07 UTC (rev 21380) +++ trunk/packages/genometools/trunk/debian/watch 2016-02-06 14:08:46 UTC (rev 21381) @@ -1,2 +0,0 @@ -version=3 -http://genometools.org/pub/genometools-([0-9.]+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
