Author: sascha-guest Date: 2016-02-06 14:35:58 +0000 (Sat, 06 Feb 2016) New Revision: 21382
Added: trunk/packages/aegean/trunk/debian/README.status Removed: trunk/packages/aegean/trunk/debian/README.source trunk/packages/aegean/trunk/debian/aegean.docs trunk/packages/aegean/trunk/debian/aegean.install trunk/packages/aegean/trunk/debian/aegean.links trunk/packages/aegean/trunk/debian/aegean.manpages trunk/packages/aegean/trunk/debian/changelog trunk/packages/aegean/trunk/debian/compat trunk/packages/aegean/trunk/debian/control trunk/packages/aegean/trunk/debian/copyright trunk/packages/aegean/trunk/debian/man/ trunk/packages/aegean/trunk/debian/patches/ trunk/packages/aegean/trunk/debian/rules trunk/packages/aegean/trunk/debian/source/ trunk/packages/aegean/trunk/debian/tests/ trunk/packages/aegean/trunk/debian/upstream/ trunk/packages/aegean/trunk/debian/watch Log: add git migration note, clean up directory Deleted: trunk/packages/aegean/trunk/debian/README.source =================================================================== --- trunk/packages/aegean/trunk/debian/README.source 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/README.source 2016-02-06 14:35:58 UTC (rev 21382) @@ -1 +0,0 @@ -Please use the 'get-orig-source' rules target to get the source. It needs to be repacked for dfsg reasons. Added: trunk/packages/aegean/trunk/debian/README.status =================================================================== --- trunk/packages/aegean/trunk/debian/README.status (rev 0) +++ trunk/packages/aegean/trunk/debian/README.status 2016-02-06 14:35:58 UTC (rev 21382) @@ -0,0 +1 @@ +This package has been migrated to Git: https://anonscm.debian.org/git/debian-med/aegean.git Deleted: trunk/packages/aegean/trunk/debian/aegean.docs =================================================================== --- trunk/packages/aegean/trunk/debian/aegean.docs 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/aegean.docs 2016-02-06 14:35:58 UTC (rev 21382) @@ -1 +0,0 @@ -README.md Deleted: trunk/packages/aegean/trunk/debian/aegean.install =================================================================== --- trunk/packages/aegean/trunk/debian/aegean.install 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/aegean.install 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,8 +0,0 @@ -bin/parseval usr/bin -bin/locuspocus usr/bin -bin/xtractore usr/bin -bin/canon-gff3 usr/bin -bin/pmrna usr/bin -bin/gaeval usr/bin -bin/tidygff3 usr/bin -share/aegean usr/share Deleted: trunk/packages/aegean/trunk/debian/aegean.links =================================================================== --- trunk/packages/aegean/trunk/debian/aegean.links 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/aegean.links 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,4 +0,0 @@ -/usr/share/javascript/mootools/mootools.js /usr/share/aegean/vendor/mootools-core-1.3.2-full-nocompat-yc.js -/usr/share/javascript/mootools/mootools-more.js /usr/share/aegean/vendor/mootools-more-1.3.2.1.js -/usr/share/javascript/jquery/jquery.js /usr/share/aegean/vendor/jquery.js -/usr/share/javascript/jquery-datatables/jquery.dataTables.js /usr/share/aegean/vendor/jquery.dataTables.js Deleted: trunk/packages/aegean/trunk/debian/aegean.manpages =================================================================== --- trunk/packages/aegean/trunk/debian/aegean.manpages 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/aegean.manpages 2016-02-06 14:35:58 UTC (rev 21382) @@ -1 +0,0 @@ -debian/man/* Deleted: trunk/packages/aegean/trunk/debian/changelog =================================================================== --- trunk/packages/aegean/trunk/debian/changelog 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/changelog 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,51 +0,0 @@ -aegean (0.15.1+dfsg-3) UNRELEASED; urgency=medium - - [ Jon Ison, Steffen Moeller, Sascha Steinbiss ] - * Added EDAM annotation. - - -- Steffen Moeller <[email protected]> Fri, 05 Feb 2016 20:30:36 +0100 - -aegean (0.15.1+dfsg-2) unstable; urgency=medium - - * Remove broken archs, as revealed by newly added tests. - - -- Sascha Steinbiss <[email protected]> Sat, 09 Jan 2016 18:28:59 +0000 - -aegean (0.15.1+dfsg-1) unstable; urgency=medium - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Sat, 09 Jan 2016 14:16:31 +0000 - -aegean (0.14.1+dfsg2-2) unstable; urgency=low - - * d/rules: build w/o parallelism, set LC_ALL - * patch Makefile to remove nondeterminism - - -- Sascha Steinbiss <[email protected]> Sun, 29 Nov 2015 19:19:01 +0000 - -aegean (0.14.1+dfsg2-1) unstable; urgency=medium - - * Exclude DataTables JS source, add Depends to new package - Closes: #798900 - * Remove now redundant Lintian override - - -- Sascha Steinbiss <[email protected]> Fri, 27 Nov 2015 22:35:59 +0000 - -aegean (0.14.1+dfsg-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Sat, 10 Oct 2015 09:43:34 +0000 - -aegean (0.13.0+dfsg-1) unstable; urgency=low - - * New upstream release. - - -- Sascha Steinbiss <[email protected]> Tue, 28 Jul 2015 08:50:09 +0000 - -aegean (0.10.2+dfsg-1) unstable; urgency=low - - * Initial release (Closes: #769162) - - -- Sascha Steinbiss <[email protected]> Tue, 11 Nov 2014 11:14:11 +0000 Deleted: trunk/packages/aegean/trunk/debian/compat =================================================================== --- trunk/packages/aegean/trunk/debian/compat 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/compat 2016-02-06 14:35:58 UTC (rev 21382) @@ -1 +0,0 @@ -9 Deleted: trunk/packages/aegean/trunk/debian/control =================================================================== --- trunk/packages/aegean/trunk/debian/control 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/control 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,41 +0,0 @@ -Source: aegean -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Sascha Steinbiss <[email protected]> -Section: science -Priority: optional -Build-Depends: debhelper (>= 9), - libcairo2-dev, - libgenometools0-dev, - python, - git -Standards-Version: 3.9.6 -Testsuite: autopkgtest -Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/aegean/trunk/ -Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/aegean/trunk/ -Homepage: http://standage.github.io/AEGeAn - -Package: aegean -Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32 -Depends: ${shlibs:Depends}, - ${misc:Depends}, - libjs-jquery, - libjs-jquery-datatables, - libjs-mootools, - libgenometools0 -Description: integrated genome analysis toolkit - The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome - Annotations. The toolkit includes a variety of analysis programs, e.g. for - comparing distinct sets of gene structure annotations (ParsEval), computation - of gene loci (LocusPocus) and more. - -Package: aegean-dbg -Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32 -Section: debug -Priority: extra -Depends: ${shlibs:Depends}, - ${misc:Depends}, - aegean (= ${binary:Version}) -Description: integrated genome analysis toolkit, with debug symbols - This package contains debug information stripped from AEGeAn. - You may decide to install it to help identifying issues, typically - to help communication with upstream developers. Deleted: trunk/packages/aegean/trunk/debian/copyright =================================================================== --- trunk/packages/aegean/trunk/debian/copyright 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/copyright 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,21 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: aegean -Source: http://aegean.readthedocs.org/en/v0.10.2/license.html -Files-Excluded: data/share/vendor/jquery.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.js data/share/vendor/jquery.dataTables.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/jquery.dataTables.js data/share/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-core-1.3.2-full-nocompat-yc.js data/share/vendor/mootools-more-1.3.2.1.js data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/mootools-more-1.3.2.1.js - -Files: - * -Copyright: - 2010-2015, Daniel S. Standage and CONTRIBUTORS -License: ISC - Permission to use, copy, modify, and/or distribute this software for any - purpose with or without fee is hereby granted, provided that the above - copyright notice and this permission notice appear in all copies. - . - THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES - WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF - MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR - ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES - WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN - ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF - OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. \ No newline at end of file Deleted: trunk/packages/aegean/trunk/debian/rules =================================================================== --- trunk/packages/aegean/trunk/debian/rules 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/rules 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,39 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- - -DH_VERBOSE=1 -DEBVERS := $(shell dpkg-parsechangelog | sed -n -e 's/^Version: //p') -VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[~-].*//') -OVERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[[:digit:]]*://' -e 's/[+].*//') -export DESTDIR=$(CURDIR)/debian/tmp -export LC_ALL=C.UTF-8 - -BITS:=$(shell dpkg-architecture | grep DEB_BUILD_ARCH_BITS | cut -f 2 -d'=') -ifeq ($(BITS),64) - 64BIT:=yes -else - 64BIT:=no -endif - -%: - dh $@ - -override_dh_auto_build: - dh_auto_build -- prefix=$(DESTDIR) 64bit=$(64BIT) errorcheck=no - -override_dh_auto_test: - dh_auto_test -- useshared=yes 64bit=$(64BIT) testthreads=5 - -override_dh_auto_install: - dh_auto_install -- 64bit=$(64BIT) prefix=$(DESTDIR) - -override_dh_strip: - dh_strip --dbg-package=aegean-dbg - -override_dh_installdocs: - cp $(CURDIR)/README.md $(CURDIR)/README - dh_installdocs - -get-orig-source: - uscan --verbose --force-download --repack --compression xz --destdir=.. - mv ../aegean_$(OVERSION).orig.tar.xz ../aegean_$(VERSION).orig.tar.xz Deleted: trunk/packages/aegean/trunk/debian/watch =================================================================== --- trunk/packages/aegean/trunk/debian/watch 2016-02-06 14:08:46 UTC (rev 21381) +++ trunk/packages/aegean/trunk/debian/watch 2016-02-06 14:35:58 UTC (rev 21382) @@ -1,4 +0,0 @@ -version=3 -opts=uversionmangle=s/(\d)[_\.\-\+]?((RC|rc|pre|dev|beta|alpha|b|a)\d*)$/$1~$2/,dversionmangle=s/\+(debian|dfsg|ds|deb)\d*$// \ -https://github.com/standage/AEGeAn/tags .*/v?(\d.*)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz)) - _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
