This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository spades.
commit a43a86b792d04d1af074ed6df5ab8e949858687d Author: Sascha Steinbiss <[email protected]> Date: Thu Feb 11 11:32:57 2016 +0000 use wrapper --- debian/links | 11 ++++++----- debian/rules | 43 ++++++++----------------------------------- 2 files changed, 14 insertions(+), 40 deletions(-) diff --git a/debian/links b/debian/links index 978cfb3..c676348 100644 --- a/debian/links +++ b/debian/links @@ -1,5 +1,6 @@ -#usr/bin/spades usr/bin/dipspades -#usr/lib/spades/share/spades/test_dataset usr/share/doc/spades/examples -#usr/bin/bwa usr/bin/bwa-spades -#etc/spades usr/share/spades/configs -#usr/share usr/lib/spades/share +usr/bin/spades usr/bin/spades.py +usr/bin/spades usr/bin/spades +usr/bin/spades usr/bin/dipspades.py +usr/bin/spades usr/bin/dipspades +usr/bin/spades usr/bin/truspades.py +usr/bin/spades usr/bin/truspades \ No newline at end of file diff --git a/debian/rules b/debian/rules index 7e40235..bf44887 100755 --- a/debian/rules +++ b/debian/rules @@ -8,6 +8,7 @@ CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) $(CPPFLAGS) LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') TMPDIR := $(CURDIR)/install_spades +LIBDIR := debian/$(DEBPKGNAME)/usr/lib/spades PREFIX:=/usr BUILD_DIR:=$(CURDIR)/build_spades @@ -41,44 +42,16 @@ override_dh_auto_install: override_dh_install: dh_install - # move those binaries away from /usr/bin that do not need to be called explicitly - #mkdir -p $(LIBDIR) - #mv debian/$(DEBPKGNAME)/usr/bin $(LIBDIR) - #mkdir -p $(LIBDIR)/share - #mv $(SHAREDIR) $(LIBDIR)/share - #for pyfile in `ls $(LIBDIR)/bin/*.py` ; do \ - # mv $$pyfile $(SHAREDIR) ; \ - # ln -s ../../../share/$(DEBPKGNAME)/`basename $$pyfile` $(LIBDIR)/bin/`basename $$pyfile` ; \ - #done - #touch $(SHAREDIR)/spades_pipeline/__init__.py - # install wrapper - #cp -a debian/bin debian/$(DEBPKGNAME)/usr/ - # delete duplicate of license - find debian -type f -name GPLv2.txt -delete - find debian -type f -name LICENSE -delete - # - # for some strange reason the test suite fails if bwa is not build - # we just do not install it but rather remove the executable from - # installation dir and replace it by a link to the Debian packaged bwa - find debian -type f -name bwa-spades -delete - # sort out config files - #for cfile in `find debian/$(DEBPKGNAME)/etc -name "*.template"` ; do \ - # ifile=`echo $${cfile} | sed 's/\.template$$//'` ; \ - # if [ -e $${ifile} ] ; then \ - # rm -f $${cfile} ; \ - # else \ - # mv $${cfile} $${ifile} ; \ - # fi ; \ - #done - #find debian/$(DEBPKGNAME)/etc -name "*.i" -delete - #find debian/$(DEBPKGNAME)/etc -name "*.propertie" -delete - # remove config templates - #rm -rf debian/$(DEBPKGNAME)/usr/share/$(DEBPKGNAME)/configs + mkdir -p $(LIBDIR) + mv debian/$(DEBPKGNAME)/usr/bin $(LIBDIR) + mkdir -p debian/$(DEBPKGNAME)/usr/bin + install debian/bin/spades debian/$(DEBPKGNAME)/usr/bin/ + chmod +x debian/$(DEBPKGNAME)/usr/bin/spades + rm -f debian/$(DEBPKGNAME)/usr/share/spades/GPLv2.txt + rm -f debian/$(DEBPKGNAME)/usr/share/spades/LICENSE override_dh_installdocs: dh_installdocs - # move documentation - #find debian/$(DEBPKGNAME)/usr -type f -name "*.html" -exec mv \{\} debian/$(DEBPKGNAME)/usr/share/doc/$(DEBPKGNAME) \; override_dh_installchangelogs: lynx -dump changelog.html > changelog -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/spades.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
