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commit eaa5c109abc2af833bb91f392f4ebc07b9d8e5bc Author: Afif Elghraoui <[email protected]> Date: Sat Feb 27 00:13:25 2016 -0800 Add manpage stubs as pointers to more detailed documentation --- debian/man/Honey.1 | 21 +++++++++++++++++++++ debian/man/Jelly.1 | 15 +++++++++++++++ debian/pbhoney.links | 1 + debian/pbhoney.manpages | 1 + debian/pbjelly.links | 1 + debian/pbjelly.manpages | 1 + 6 files changed, 40 insertions(+) diff --git a/debian/man/Honey.1 b/debian/man/Honey.1 new file mode 100644 index 0000000..2b40006 --- /dev/null +++ b/debian/man/Honey.1 @@ -0,0 +1,21 @@ +.TH HONEY 1 "February 2016" +.SH NAME +Honey \- genomic structural variation discovery +.SH SYNOPSIS +.B Honey +.RI { subcommand } [ options ] +.SH DESCRIPTION +PBHoney is an implementation of two variant-identification +approaches designed to exploit the high mappability of long reads +(i.e., greater than 10,000 bp). PBHoney considers both intra-read +discordance and soft-clipped tails of long reads to identify +structural variants. +.SH OPTIONS +For a complete description, see the help menu +.TP +.B \-h, \-\-help +Show summary of options. +.SH SEE ALSO +.BR blasr (1) +.br +/usr/share/doc/pbhoney/HoneyReadme.txt diff --git a/debian/man/Jelly.1 b/debian/man/Jelly.1 new file mode 100644 index 0000000..f2e37f9 --- /dev/null +++ b/debian/man/Jelly.1 @@ -0,0 +1,15 @@ +.TH JELLY 1 "February 2016" +.SH NAME +Jelly \- genome assembly upgrading tool +.SH DESCRIPTION +PBJelly is a highly automated pipeline that aligns long sequencing +reads (such as PacBio RS reads or long 454 reads in fasta format) +to high-confidence draft assembles. PBJelly fills or reduces as +many captured gaps as possible to produce upgraded draft genomes. +.SH OPTIONS +For a complete description, see the help menu +.TP +.B \-h, \-\-help +Show summary of options. +.SH SEE ALSO +/usr/share/doc/pbjelly/JellyReadme.txt diff --git a/debian/pbhoney.links b/debian/pbhoney.links index 61f5021..3ce7724 100644 --- a/debian/pbhoney.links +++ b/debian/pbhoney.links @@ -1,2 +1,3 @@ /usr/lib/python2.7/dist-packages/pbsuite/honey/Honey.py /usr/bin/Honey /usr/bin/Honey /usr/bin/Honey.py +/usr/share/man/man1/Honey.1 /usr/share/man/man1/Honey.py.1 diff --git a/debian/pbhoney.manpages b/debian/pbhoney.manpages new file mode 100644 index 0000000..2ad779c --- /dev/null +++ b/debian/pbhoney.manpages @@ -0,0 +1 @@ +debian/man/Honey.1 diff --git a/debian/pbjelly.links b/debian/pbjelly.links index c1cc2d0..ffb9eaa 100644 --- a/debian/pbjelly.links +++ b/debian/pbjelly.links @@ -1,2 +1,3 @@ /usr/lib/python2.7/dist-packages/pbsuite/jelly/Jelly.py /usr/bin/Jelly /usr/bin/Jelly /usr/bin/Jelly.py +/usr/share/man/man1/Jelly.1 /usr/share/man/man1/Jelly.py.1 \ No newline at end of file diff --git a/debian/pbjelly.manpages b/debian/pbjelly.manpages new file mode 100644 index 0000000..17d5de7 --- /dev/null +++ b/debian/pbjelly.manpages @@ -0,0 +1 @@ +debian/man/Jelly.1 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbsuite.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
