This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository circlator.
commit 36a5a23840e94d64b9f372db1f8f53056560779b Author: Afif Elghraoui <[email protected]> Date: Mon Mar 7 17:07:37 2016 -0800 Initial packaging --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 34 ++++++++++++++++++++++++++++++++++ debian/copyright | 29 +++++++++++++++++++++++++++++ debian/docs | 1 + debian/rules | 7 +++++++ debian/source/format | 1 + 7 files changed, 78 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..b0b0c9e --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +circlator (1.1.4-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #nnnn) + + -- Afif Elghraoui <[email protected]> Mon, 07 Mar 2016 14:20:54 -0800 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..e3cb9df --- /dev/null +++ b/debian/control @@ -0,0 +1,34 @@ +Source: circlator +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Afif Elghraoui <[email protected]> +Build-Depends: + debhelper (>= 9), + dh-python, + python3-setuptools, + python3-openpyxl, + python3-jdcal, + fastaq (>= 3.10.0), + python3-pysam (>= 0.8.1), + python3-pymummer (>= 0.6.1), + python3-bio-assembly-refinement, +Standards-Version: 3.9.7 +Homepage: http://sanger-pathogens.github.io/circlator/ +Vcs-Git: https://anonscm.debian.org/git/debian-med/circlator.git +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/circlator.git + +Package: circlator +Architecture: all +Depends: + ${misc:Depends}, + ${python3:Depends}, + prodigal, + bwa (>= 0.7.12), + mummer, + samtools, + spades, +Description: circularize genome assemblies + Circlator is a tool to automate assembly circularization for bacterial and + small eukaryotic genomes and produce accurate linear representations of + circular sequences. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..dc27598 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,29 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: circlator +Source: https://github.com/sanger-pathogens/circlator + +Files: * +Copyright: <years> <put author's name and email here> + <years> <likewise for another author> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2016 Afif Elghraoui <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..b43bf86 --- /dev/null +++ b/debian/docs @@ -0,0 +1 @@ +README.md diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..4a7e6cd --- /dev/null +++ b/debian/rules @@ -0,0 +1,7 @@ +#!/usr/bin/make -f + +#DH_VERBOSE = 1 +#include /usr/share/dpkg/default.mk + +%: + dh $@ --with python3 --buildsystem=pybuild diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/circlator.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
