This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository augustus.
commit f00bfb1d5338c8562c2399c8d263acfb6c33c7e2 Author: Sascha Steinbiss <[email protected]> Date: Sat Mar 19 21:44:42 2016 +0000 update deps --- debian/control | 6 +++--- debian/patches/build_auxprogs | 15 +++++++++++++++ debian/rules | 6 +++++- 3 files changed, 23 insertions(+), 4 deletions(-) diff --git a/debian/control b/debian/control index f37a6e3..6c6e745 100644 --- a/debian/control +++ b/debian/control @@ -4,7 +4,7 @@ Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Sascha Steinbiss <[email protected]> Build-Depends: debhelper (>= 9), libsqlite3-dev, libboost-iostreams-dev, - zlib1g-dev, libgsl0-dev, libboost-graph-dev, liblpsolve55-dev, + zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev Standards-Version: 3.9.7 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/augustus.git @@ -15,10 +15,10 @@ Package: augustus Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, - libgsl0ldbl, + libgsl2, zlib1g, augustus-data, - libbamtools2.3.0, + libbamtools2.4.0, libhts1, libncurses5 Suggests: augustus-auxprogs diff --git a/debian/patches/build_auxprogs b/debian/patches/build_auxprogs index b1a4f38..b572d98 100644 --- a/debian/patches/build_auxprogs +++ b/debian/patches/build_auxprogs @@ -199,3 +199,18 @@ Author: Sascha Steinbiss <[email protected]> clean: rm -rf *o joingenes; rm -rf ../../bin/joingenes +--- a/auxprogs/aln2wig/Makefile ++++ b/auxprogs/aln2wig/Makefile +@@ -1,10 +1,10 @@ + CFLAGS := -Wall -Wno-sign-compare -ansi -pedantic -O2 -ggdb ${CFLAGS} + + psl2wig : aln2wig.o +- gcc $(CFLAGS) -o aln2wig aln2wig.o; ++ gcc $(CFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(LDFLAGS) -o aln2wig aln2wig.o; + cp aln2wig ../../bin + psl2wig.o : aln2wig.c +- gcc $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -c aln2wig.c ++ gcc $(CPPFLAGS) $(CXXFLAGS) $(CFLAGS) $(LDFLAGS) -c aln2wig.c + + all : psl2wig + diff --git a/debian/rules b/debian/rules index 1721307..9b20d76 100755 --- a/debian/rules +++ b/debian/rules @@ -11,6 +11,8 @@ override_dh_auto_clean: cd $(CURDIR) cd auxprogs/homGeneMapping/src && $(MAKE) clean cd $(CURDIR) + cd auxprogs/aln2wig && $(MAKE) clean + cd $(CURDIR) cd auxprogs/joingenes && $(MAKE) clean cd $(CURDIR) dh_auto_clean @@ -19,6 +21,8 @@ override_dh_auto_build: dh_auto_build cd auxprogs/bam2hints && $(MAKE) cd $(CURDIR) + cd auxprogs/aln2wig && $(MAKE) + cd $(CURDIR) cd auxprogs/checkTargetSortedness && $(MAKE) cd $(CURDIR) cd auxprogs/homGeneMapping/src && $(MAKE) @@ -28,7 +32,7 @@ override_dh_auto_build: override_dh_auto_install: mkdir -p debian/augustus/usr/bin - install bin/augustus debian/augustus/usr/bin + install bin/* debian/augustus/usr/bin mkdir -p debian/augustus/usr/share/augustus cp -r scripts debian/augustus/usr/share/augustus chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/augustus.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
