This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch debian/jessie-backports in repository python-cobra.
commit 1cec8549a046f1e4f83dd3fc4099e647bf7b8f5a Merge: f8c458c 046d510 Author: Afif Elghraoui <[email protected]> Date: Wed Mar 30 23:17:31 2016 -0700 Merge tag 'debian/0.4.1-1' into debian/jessie-backports python-cobra (0.4.1-1) unstable; urgency=medium * Imported Upstream version 0.4.1 * Refreshed patch .gitignore | 89 ++- .travis.yml | 4 +- appveyor.yml | 5 +- appveyor/build_glpk.py | 4 +- cobra/VERSION | 2 +- cobra/__init__.py | 26 +- cobra/core/Metabolite.py | 35 +- cobra/core/Model.py | 20 + cobra/core/Reaction.py | 118 ++-- cobra/design/design_algorithms.py | 4 +- cobra/flux_analysis/deletion_worker.py | 7 +- cobra/flux_analysis/double_deletion.py | 6 +- cobra/flux_analysis/essentiality.py | 49 +- cobra/flux_analysis/gapfilling.py | 3 +- cobra/flux_analysis/loopless.py | 2 +- cobra/flux_analysis/moma.py | 3 +- cobra/flux_analysis/parsimonious.py | 114 ++-- cobra/flux_analysis/phenotype_phase_plane.py | 5 +- cobra/flux_analysis/reaction.py | 167 +++--- cobra/flux_analysis/single_deletion.py | 6 +- cobra/flux_analysis/summary.py | 191 ++++++ cobra/flux_analysis/variability.py | 7 +- cobra/io/mat.py | 2 +- cobra/solvers/cglpk.pyx | 24 +- cobra/solvers/coin.py | 2 +- cobra/test/flux_analysis.py | 162 +++++- cobra/test/io_tests.py | 4 + cobra/test/unit_tests.py | 86 +++ cobra/topology/__init__.py | 2 +- cobra/topology/reporter_metabolites.py | 114 ++-- debian/changelog | 7 + debian/control | 2 +- debian/copyright | 2 +- debian/patches/mathjax.patch | 8 +- documentation_builder/autodoc.sh | 2 - documentation_builder/building_model.ipynb | 22 +- documentation_builder/building_model.rst | 179 ------ documentation_builder/cobra.design.rst | 22 + documentation_builder/cobra.flux_analysis.rst | 8 + documentation_builder/cobra.manipulation.rst | 16 + documentation_builder/cobra.rst | 1 + documentation_builder/conf.py | 171 +----- documentation_builder/deletions.ipynb | 230 ++++---- documentation_builder/deletions.rst | 640 --------------------- documentation_builder/faq.ipynb | 32 +- documentation_builder/faq.rst | 178 ------ documentation_builder/gapfilling.ipynb | 92 ++- documentation_builder/gapfilling.rst | 104 ---- documentation_builder/getting_started.ipynb | 64 +-- documentation_builder/getting_started.rst | 489 ---------------- documentation_builder/io.ipynb | 20 +- documentation_builder/io.rst | 170 ------ documentation_builder/loopless.ipynb | 24 +- documentation_builder/loopless.rst | 194 ------- .../loopless_files/loopless_3_0.png | Bin 10699 -> 0 bytes documentation_builder/milp.ipynb | 10 +- documentation_builder/milp.rst | 283 --------- documentation_builder/phenotype_phase_plane.ipynb | 38 +- documentation_builder/phenotype_phase_plane.rst | 85 --- .../phenotype_phase_plane_3_0.png | Bin 89909 -> 0 bytes .../phenotype_phase_plane_5_0.png | Bin 100924 -> 0 bytes .../phenotype_phase_plane_5_1.png | Bin 92540 -> 0 bytes .../phenotype_phase_plane_7_0.png | Bin 63193 -> 0 bytes documentation_builder/pymatbridge.ipynb | 23 +- documentation_builder/pymatbridge.rst | 124 ---- documentation_builder/qp.ipynb | 26 +- documentation_builder/qp.rst | 190 ------ documentation_builder/qp_files/qp_12_0.png | Bin 14601 -> 0 bytes documentation_builder/qp_files/qp_1_0.png | Bin 18553 -> 0 bytes documentation_builder/requirements.txt | 2 + documentation_builder/simulating.ipynb | 489 +++++++++++----- documentation_builder/simulating.rst | 436 -------------- documentation_builder/solvers.ipynb | 34 +- documentation_builder/solvers.rst | 451 --------------- 74 files changed, 1675 insertions(+), 4456 deletions(-) diff --cc debian/changelog index 59953c5,6087b6e..c5cc0d5 --- a/debian/changelog +++ b/debian/changelog @@@ -1,9 -1,10 +1,16 @@@ + python-cobra (0.4.1-1) unstable; urgency=medium + + * Imported Upstream version 0.4.1 + * Refreshed patch + + -- Afif Elghraoui <[email protected]> Thu, 24 Mar 2016 20:31:39 -0700 + +python-cobra (0.4.0+0-1~bpo8+1) jessie-backports; urgency=medium + + * Rebuild for jessie-backports. + + -- Afif Elghraoui <[email protected]> Wed, 16 Mar 2016 00:20:01 -0700 + python-cobra (0.4.0+0-1) unstable; urgency=medium * Imported Upstream version 0.4.0 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
