This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository iva.
commit 1dfad624d5512c113c1462d8d9d8fe7b2b751fad Merge: 4cd305a 0bb6f95 Author: Sascha Steinbiss <[email protected]> Date: Thu Apr 28 21:37:11 2016 +0000 Merge tag 'upstream/1.0.4' Upstream version 1.0.4 iva/__init__.py | 1 + iva/assembly.py | 5 +- iva/common.py | 2 +- iva/external_progs.py | 8 + iva/gage/GetFastaStats$ContigAt.class | Bin 489 -> 0 bytes iva/gage/GetFastaStats.class | Bin 9674 -> 0 bytes iva/gage/SizeFasta.class | Bin 3241 -> 0 bytes iva/gage/SplitFastaByLetter.class | Bin 2497 -> 0 bytes iva/gage/Utils$Pair.class | Bin 621 -> 0 bytes iva/gage/Utils$ToProtein.class | Bin 4565 -> 0 bytes iva/gage/Utils$Translate.class | Bin 1226 -> 0 bytes iva/gage/Utils.class | Bin 5321 -> 0 bytes iva/gage/getScaffoldStats$1.class | Bin 199 -> 0 bytes iva/gage/getScaffoldStats$Scaffold.class | Bin 1232 -> 0 bytes iva/gage/getScaffoldStats.class | Bin 12187 -> 0 bytes iva/kcount.py | 16 +- iva/kraken.py | 21 +-- iva/seed.py | 7 +- iva/seed_processor.py | 7 +- iva/test_data_runner.py | 50 ++++++ iva/test_run_data/hiv_pcr_primers.fa | 36 +++++ iva/test_run_data/iva_contigs_no_trimmomatic.fasta | 167 +++++++++++++++++++++ .../iva_contigs_with_trimmomatic.fasta | 152 +++++++++++++++++++ iva/test_run_data/reads_1.fq.gz | Bin 0 -> 3813239 bytes iva/test_run_data/reads_2.fq.gz | Bin 0 -> 4661713 bytes iva/test_run_data/reference.fasta | 152 +++++++++++++++++++ iva/tests/kcount_test.py | 8 + scripts/iva | 19 +++ setup.py | 8 +- 29 files changed, 629 insertions(+), 30 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/iva.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
