This is an automated email from the git hooks/post-receive script. bob.dybian-guest pushed a commit to branch master in repository fastqtl.
commit 0b964d008f0158c40f0f11b6856e9a3992b8cf4e Merge: 27ca6a5 8cf0631 Author: Dylan Aïssi <[email protected]> Date: Mon May 2 23:44:30 2016 +0200 Merge tag 'upstream/2.184+dfsg' Upstream version 2.184+dfsg INSTALL | 142 ++++++ LICENCE | 621 ++++++++++++++++++++++++ Makefile | 79 ++++ README | 1 + doc/img/fastqtl_checks.jpg | Bin 0 -> 188036 bytes doc/img/fastqtl_screenshot_nominal.jpg | Bin 0 -> 274581 bytes doc/img/fastqtl_screenshot_permutation.jpg | Bin 0 -> 399258 bytes doc/index.html | 27 ++ doc/pages/cis_mapping.html | 35 ++ doc/pages/cis_nominal.html | 250 ++++++++++ doc/pages/cis_permutation.html | 354 ++++++++++++++ doc/pages/footer.html | 15 + doc/pages/format_bed.html | 71 +++ doc/pages/format_cov.html | 52 ++ doc/pages/format_vcf.html | 63 +++ doc/pages/header.html | 13 + doc/pages/homepage.html | 56 +++ doc/pages/install.html | 97 ++++ doc/pages/leftmenu.html | 37 ++ doc/pages/options.html | 247 ++++++++++ doc/pages/template.html | 51 ++ doc/script/print_last_modif_date.js | 3 + doc/style/default.css | 228 +++++++++ example/covariates.txt.gz | Bin 0 -> 3379 bytes example/genotypes.vcf.gz | Bin 0 -> 15890106 bytes example/genotypes.vcf.gz.tbi | Bin 0 -> 26376 bytes example/interaction.txt | 373 +++++++++++++++ example/phenotypes.bed.gz | Bin 0 -> 404725 bytes example/phenotypes.bed.gz.tbi | Bin 0 -> 3703 bytes script/calulateNominalPvalueThresholds.R | 33 ++ src/analysisMapping.cpp | 142 ++++++ src/analysisNominal.cpp | 69 +++ src/analysisPermutation.cpp | 136 ++++++ src/analysisPermutationInteraction.cpp | 126 +++++ src/analysisPermutationPerGroup.cpp | 160 +++++++ src/analysisPermutationSequence.cpp | 135 ++++++ src/commands.cpp | 52 ++ src/data.h | 210 +++++++++ src/df.cpp | 100 ++++ src/fastQTL.cpp | 290 ++++++++++++ src/management.cpp | 252 ++++++++++ src/mle.cpp | 88 ++++ src/readCovariates.cpp | 77 +++ src/readGenotypes.cpp | 117 +++++ src/readGroups.cpp | 54 +++ src/readInclusionsExclusions.cpp | 89 ++++ src/readInteractions.cpp | 51 ++ src/readPhenotypes.cpp | 119 +++++ src/readThresholds.cpp | 53 +++ src/region.h | 66 +++ src/residualizer.cpp | 142 ++++++ src/residualizer.h | 53 +++ src/utils/ranker.h | 224 +++++++++ src/utils/tabix.cpp | 107 +++++ src/utils/tabix.hpp | 41 ++ src/utils/utils.cpp | 731 +++++++++++++++++++++++++++++ src/utils/utils.h | 312 ++++++++++++ 57 files changed, 6844 insertions(+) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fastqtl.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
