This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository iva.
commit cdc2a36d1e370ae898792185d6e2a295ec78f314 Merge: 7f93763 5fd9425 Author: Sascha Steinbiss <[email protected]> Date: Thu May 5 09:17:44 2016 +0000 Merge tag 'upstream/1.0.5' Upstream version 1.0.5 iva/__init__.py | 14 ++++++++++++++ iva/assembly.py | 14 ++++++++++++++ iva/common.py | 16 +++++++++++++++- iva/contig.py | 14 ++++++++++++++ iva/contig_trim.py | 14 ++++++++++++++ iva/edge.py | 14 ++++++++++++++ iva/egg_extract.py | 14 ++++++++++++++ iva/external_progs.py | 18 ++++++++++++++++-- iva/graph.py | 14 ++++++++++++++ iva/kcount.py | 14 ++++++++++++++ iva/kmers.py | 14 ++++++++++++++ iva/kraken.py | 14 ++++++++++++++ iva/mapping.py | 20 +++++++++++++++++++- iva/mummer.py | 14 ++++++++++++++ iva/qc.py | 14 ++++++++++++++ iva/qc_external.py | 28 ++++++++++++++++++++++------ iva/ratt/embl2gff.pl | 14 ++++++++++++++ iva/ratt/genbank2embl.pl | 15 +++++++++++++++ iva/ratt/main.ratt.pl | 21 ++++++++++++--------- iva/ratt/ratt_correction.pm | 19 ++++++++++++++----- iva/ratt/start.ratt.sh | 15 ++++++++++++++- iva/read_trim.py | 14 ++++++++++++++ iva/seed.py | 14 ++++++++++++++ iva/seed_processor.py | 14 ++++++++++++++ iva/test_data_runner.py | 16 +++++++++++++++- iva/tests/assembly_test.py | 14 ++++++++++++++ iva/tests/contig_test.py | 14 ++++++++++++++ iva/tests/contig_trim_test.py | 14 ++++++++++++++ iva/tests/edge_test.py | 14 ++++++++++++++ iva/tests/egg_extract_test.py | 14 ++++++++++++++ iva/tests/external_progs_test.py | 14 ++++++++++++++ iva/tests/graph_test.py | 14 ++++++++++++++ iva/tests/kcount_test.py | 14 ++++++++++++++ iva/tests/kmers_test.py | 14 ++++++++++++++ iva/tests/kraken_test.py | 14 ++++++++++++++ iva/tests/mapping_test.py | 14 ++++++++++++++ iva/tests/mummer_test.py | 14 ++++++++++++++ iva/tests/qc_external_test.py | 14 ++++++++++++++ iva/tests/qc_test.py | 14 ++++++++++++++ iva/tests/read_trim_test.py | 14 ++++++++++++++ iva/tests/seed_processor_test.py | 14 ++++++++++++++ iva/tests/seed_test.py | 14 ++++++++++++++ scripts/iva | 20 +++++++++++++++++--- scripts/iva_qc | 14 ++++++++++++++ scripts/iva_qc_make_db | 14 ++++++++++++++ setup.py | 17 ++++++++++++++++- 46 files changed, 665 insertions(+), 30 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/iva.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
