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commit 7553b47bce873eec4714da721df91f9009cb2150 Author: Sascha Steinbiss <[email protected]> Date: Mon May 16 10:35:04 2016 +0000 Imported Upstream version 2.3.2 --- README.md | 5 ++++- VERSION | 2 +- src/main.c | 4 ++-- 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 5928c9f..6d36cdd 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ Rapidly decreasing genome sequencing costs have led to a proportionate increase The software can be cited as: -[Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris, "SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments", bioRxiv, doi: http://dx.doi.org/10.1101/038190 (2016).](http://biorxiv.org/content/early/2016/01/29/038190) +["SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments", Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris, Microbial Genomics 2(4), (2016)](http://dx.doi.org/10.1099/mgen.0.000056) ``` Usage: snp-sites [-mvph] [-o output_filename] <file> @@ -70,6 +70,7 @@ There are a few ways to install snp-sites. The simpliest way is using apt (Debia * OSX - using HomeBrew * OSX/Linux - from source * OSX/Linux - from a release tarball +* Windows/OSX/Linux - using a Virtual Machine ## Linux - Ubuntu/Debian If you have a recent version of Ubuntu or Debian then you can install it using apt. @@ -124,3 +125,5 @@ make sudo make install ``` +## Windows/OSX/Linux - using a Virtual Machine +A virtual machine (VM) is available containing the software. More details can be found on [the Pathogen VM page](http://sanger-pathogens.github.io/pathogens-vm/). diff --git a/VERSION b/VERSION index 2bf1c1c..f90b1af 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -2.3.1 +2.3.2 diff --git a/src/main.c b/src/main.c index 299c7d5..2740817 100644 --- a/src/main.c +++ b/src/main.c @@ -50,8 +50,8 @@ static void print_usage() printf("If you use this program, please cite:\n"); printf("\"SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments\",\n"); - printf("Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris (2016),\n"); - printf("bioRxiv doi: http://dx.doi.org/10.1101/038190\n";); + printf("Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane, Simon R. Harris,\n"); + printf("Microbial Genomics 2(4), (2016). http://dx.doi.org/10.1099/mgen.0.000056\n";); } -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/snp-sites.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
