This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to tag debian/2.1.0+dfsg-1 in repository transdecoder.
commit 921201889d2f579f55032a34d8a51c17d77d056b Merge: b2d2b5c 9d2e299 Author: Michael R. Crusoe <[email protected]> Date: Tue May 17 02:56:25 2016 -0700 Merge tag 'upstream/2.1.0+dfsg' Upstream version 2.1.0+dfsg Release.Notes => Changelog.txt | 8 ++ PerlLib/Fasta_retriever.pm | 93 ++++++++++++++ PerlLib/Longest_orf.pm | 69 ++++++++++- TransDecoder.LongOrfs | 14 +++ TransDecoder.Predict | 9 +- sample_data/README.md | 12 ++ .../blastp.results.outfmt6.gz | Bin sample_data/{ => cufflinks_example}/cleanme.pl | 0 .../{ => cufflinks_example}/pfam.domtblout.gz | Bin sample_data/{ => cufflinks_example}/runMe.sh | 17 ++- .../{ => cufflinks_example}/test.genome.fasta.gz | Bin .../{ => cufflinks_example}/test.tophat.sam.gz | Bin .../{ => cufflinks_example}/transcripts.gtf.gz | Bin sample_data/{ => pasa_example}/cleanme.pl | 18 ++- sample_data/pasa_example/genome.fasta.gz | Bin 0 -> 852337 bytes sample_data/pasa_example/pasa_assemblies.fasta.gz | Bin 0 -> 304896 bytes sample_data/pasa_example/pasa_assemblies.gff3.gz | Bin 0 -> 55455 bytes sample_data/pasa_example/runMe.sh | 21 ++++ .../simple_transcriptome_target/Trinity.fasta.gz | Bin 0 -> 359112 bytes .../{ => simple_transcriptome_target}/cleanme.pl | 16 +-- sample_data/simple_transcriptome_target/runMe.sh | 11 ++ util/cdna_alignment_orf_to_genome_orf.pl | 43 +++++-- util/create_start_PSSM.pl | 131 ++++++++++++++++++++ util/cufflinks_gtf_to_alignment_gff3.pl | 10 +- util/cufflinks_gtf_to_bed.pl | 4 +- util/extract_FL_subset.pl | 134 +++++++++++++++++++++ util/get_FL_accs.pl | 31 +++++ util/get_longest_ORF_per_transcript.pl | 63 ++++++++++ 28 files changed, 652 insertions(+), 52 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/transdecoder.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
