This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to tag debian/3.0.0+dfsg-1 in repository transdecoder.
commit cd6230978df7913e531d44b9c0a4a7107be1d1b1 Merge: 9f60ceb f9ac657 Author: Michael R. Crusoe <[email protected]> Date: Wed May 18 02:31:05 2016 -0700 Merge tag 'upstream/3.0.0+dfsg' Upstream version 3.0.0+dfsg .gitmodules | 3 + PerlLib/Gene_obj.pm | 20 +++ TransDecoder.LongOrfs | 81 +++++++-- TransDecoder.Predict | 99 ++++++++--- notes | 3 + sample_data/Makefile | 14 ++ sample_data/cufflinks_example/Makefile | 6 + sample_data/cufflinks_example/blastp.outfmt6.gz | Bin 0 -> 1957 bytes .../cufflinks_example/blastp.results.outfmt6.gz | Bin 1808 -> 0 bytes sample_data/cufflinks_example/cleanme.pl | 7 +- sample_data/cufflinks_example/pfam.domtblout.gz | Bin 12838 -> 12460 bytes sample_data/cufflinks_example/runMe.sh | 41 +++-- sample_data/pasa_example/Makefile | 6 + sample_data/pasa_example/cleanme.pl | 2 + sample_data/pasa_example/pasa_assemblies.fasta.gz | Bin 304896 -> 304706 bytes sample_data/pasa_example/pasa_assemblies.gff3.gz | Bin 55455 -> 55467 bytes .../pasa_example/pasa_assemblies_described.txt.gz | Bin 0 -> 231156 bytes sample_data/pasa_example/runMe.sh | 17 +- sample_data/simple_transcriptome_target/Makefile | 6 + sample_data/simple_transcriptome_target/cleanme.pl | 1 + sample_data/simple_transcriptome_target/runMe.sh | 4 +- util/cdna_alignment_orf_to_genome_orf.pl | 62 ++++--- util/remove_eclipsed_ORFs.pl | 4 +- util/single_best_ORF_per_transcript.pl | 187 +++++++++++++++++++++ 24 files changed, 472 insertions(+), 91 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/transdecoder.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
