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tille pushed a change to branch upstream
in repository andi.
from 8ce73df Imported Upstream version 0.9.6.1
new dad0e7a Imported Upstream version 0.10
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 27 ++++++----
README.md | 51 ++++++++++++-------
andi-manual.pdf | Bin 425545 -> 440783 bytes
configure.ac | 6 ++-
docs/andi.1.in | 8 +--
docs/manual/andi-manual.tex | 105 +++++++++++++++++++++++++++++++-------
docs/manual/references.bib | 16 +++++-
opt/strchrnul.c | 2 +
scripts/failed.zsh | 20 ++++++++
src/Makefile.am | 1 +
src/andi.c | 69 +++++++++++++++++++------
src/dist_hack.h | 13 ++---
src/esa.c | 121 ++++++++++++++++++++------------------------
src/esa.h | 3 +-
src/global.h | 13 +++++
src/io.c | 31 +++++++-----
src/model.c | 32 ++++++++----
src/process.c | 57 +++++++--------------
src/process.h | 2 +-
src/sequence.c | 46 +++++------------
src/sequence.h | 21 +++++---
test/test_esa.c | 13 ++---
test/test_seq.c | 27 ++++++----
23 files changed, 425 insertions(+), 259 deletions(-)
create mode 100755 scripts/failed.zsh
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