This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository sprai.
commit 5727ba5166a8c0fe26102bf3416023c0b9ade490 Author: Afif Elghraoui <[email protected]> Date: Wed Jun 1 22:58:30 2016 -0700 Refresh and update patch --- debian/patches/libexec.patch | 19 ++++++++++++++++--- 1 file changed, 16 insertions(+), 3 deletions(-) diff --git a/debian/patches/libexec.patch b/debian/patches/libexec.patch index 8d35233..b1fd602 100644 --- a/debian/patches/libexec.patch +++ b/debian/patches/libexec.patch @@ -1,7 +1,7 @@ Description: Set sprai libexec path and blast path for system-wide installation Author: Afif Elghraoui <[email protected]> Forwarded: not-needed -Last-Update: 2016-04-26 +Last-Update: 2016-06-01 --- sprai.orig/ezez4qsub_vx1.pl +++ sprai/ezez4qsub_vx1.pl @@ -117,8 +117,8 @@ @@ -46,8 +46,21 @@ Last-Update: 2016-04-26 -# blast_path: where blastn and makeblastdb exist in -blast_path /home/imai/bin/ -# sprai_path: where binaries of sprai (bfmt72s, nss2v_v3 and so on) exist in --sprai_path /home/imai/sprai/bin/ +-sprai_path /home/imai/test/sprai/bin/ - #### many node mode (advanced) #### - #sge: options for all the SGE jobs + #sge: options for all the SGE jobs (used by ezez4qsub_vx1.pl) +--- sprai.orig/ezez4makefile_v4.pl ++++ sprai/ezez4makefile_v4.pl +@@ -84,8 +84,8 @@ + my $estimated_depth = 0; + my @gsizes=(); + my $ca_path="/opt/wgs-8.1/Linux-amd64/bin/"; +-my $blast_path="/usr/local/bin/"; +-my $sprai_path="/usr/local/bin/"; ++my $blast_path="/usr/bin/"; ++my $sprai_path="/usr/lib/sprai/"; + my $param_makedb_rreq = ""; # not so much resource + my $param_blast_rreq = ""; # desired to have a high CPU slot for latency optimization + my $param_ec_rreq = ""; # not so much resource -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sprai.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
