This is an automated email from the git hooks/post-receive script. bob.dybian-guest pushed a commit to branch master in repository r-cran-ape.
commit 656ee99c15d5c4d26d79958e61434087b04c7083 Merge: 5cd32f5 6ea6592 Author: Dylan Aïssi <[email protected]> Date: Fri Jun 3 00:10:14 2016 +0200 Merge tag 'upstream/3.5' Upstream version 3.5 DESCRIPTION | 8 +- MD5 | 77 ++++----- NAMESPACE | 8 + R/DNA.R | 346 +++++++++++++++++++++++++++++++++++++++-- R/clustal.R | 27 +++- R/dist.topo.R | 89 +++++------ R/plot.phylo.R | 20 ++- R/plot.phyloExtra.R | 30 ++++ R/read.nexus.R | 2 +- R/root.R | 29 ++-- build/vignette.rds | Bin 194 -> 192 bytes data/hivtree.newick.rda | Bin 2190 -> 2189 bytes data/landplants.newick.rda | Bin 576 -> 575 bytes data/opsin.newick.rda | Bin 446 -> 445 bytes inst/doc/MoranI.Rnw | 2 +- inst/doc/MoranI.pdf | Bin 238529 -> 238263 bytes man/AAbin.Rd | 101 ++++++++++++ man/DNAbin.Rd | 2 +- man/DNAbin2indel.Rd | 3 +- man/LTT.Rd | 3 +- man/additive.Rd | 1 - man/all.equal.phylo.Rd | 2 +- man/alview.Rd | 12 +- man/ape-internal.Rd | 1 + man/boot.phylo.Rd | 48 +++++- man/checkAlignment.Rd | 42 +++++ man/clustal.Rd | 2 +- man/def.Rd | 2 +- man/del.gaps.Rd | 29 ++-- man/dist.dna.Rd | 6 + man/diversity.contrast.test.Rd | 2 +- man/image.DNAbin.Rd | 3 +- man/makeNodeLabel.Rd | 2 +- man/mcmc.popsize.Rd | 8 +- man/plot.phyloExtra.Rd | 56 +++++++ man/read.GenBank.Rd | 2 +- man/root.Rd | 2 +- man/trans.Rd | 52 +++++++ man/write.nexus.data.Rd | 4 +- src/ape.c | 6 +- src/dist_dna.c | 218 +++++++++++++++++++++++++- vignettes/MoranI.Rnw | 2 +- 42 files changed, 1074 insertions(+), 175 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-ape.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
